mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 128 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 40.0% | 29.6 / 43.5 | 40 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,429,984 | 0 | T | G | 34.2% | 162.4 / 15.4 | 82 | L41V (TTG→GTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 3,862,661 | 0 | T | G | 34.0% | 31.7 / 10.9 | 48 | T315P (ACC→CCC) | glvC | putative PTS enzyme II component GlvC |
| * | NC_000913 | 1,744,055 | 0 | T | G | 33.9% | 108.8 / 11.2 | 64 | V200G (GTG→GGG) | mdtK | multidrug efflux pump MdtK |
| * | NC_000913 | 4,604,344 | 0 | C | T | 33.3% | 61.6 / 13.7 | 39 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,604,350 | 0 | C | T | 33.3% | 65.2 / 12.0 | 39 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,483,254 | 0 | G | A | 32.4% | 68.7 / 13.7 | 38 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 599,576 | 0 | T | G | 31.5% | 161.2 / 14.9 | 90 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 2,367,399 | 0 | T | C | 30.6% | 136.1 / 13.3 | 94 | I110T (ATC→ACC) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| * | NC_000913 | 439,224 | 0 | C | A | 30.6% | 130.5 / 18.1 | 72 | L318F (TTG→TTT) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 30.6% | 235.9 / 17.5 | 109 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,833,567 | 0 | T | G | 30.0% | 282.1 / 17.3 | 140 | G364G (GGT→GGG) | norV | anaerobic nitric oxide reductase flavorubredoxin |
| * | NC_000913 | 2,828,506 | 0 | T | G | 29.7% | 252.2 / 32.0 | 150 | V257G (GTG→GGG) | srlD | sorbitol‑6‑phosphate 2‑dehydrogenase |
| * | NC_000913 | 3,158,376 | 0 | G | A | 29.5% | 84.0 / 12.1 | 44 | E243K (GAA→AAA) | yqhG | DUF3828 domain‑containing protein YqhG |
| * | NC_000913 | 3,731,724 | 0 | G | A | 29.4% | 97.1 / 12.7 | 51 | L198L (TTG→TTA) | xylF | xylose ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,185,199 | 0 | T | G | 29.4% | 356.4 / 38.4 | 180 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 1,434,642 | 0 | G | A | 28.9% | 86.3 / 33.0 | 45 | intergenic (‑236/+543) | ynaM/uspF | protein YnaM/universal stress protein F |
| * | NC_000913 | 2,851,654 | 0 | T | G | 28.8% | 233.7 / 28.4 | 120 | G218G (GGT→GGG) | hypB | hydrogenase isoenzymes nickel incorporation protein HypB |
| * | NC_000913 | 4,521,406 | 0 | A | T | 28.8% | 137.5 / 24.4 | 66 | F205L (TTT→TTA) | yjhF | putative transporter YjhF |
| * | NC_000913 | 266,358 | 0 | T | G | 28.6% | 166.7 / 13.1 | 78 | T66P (ACC→CCC) | yafY | inner membrane lipoprotein YafY |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 256115 | 121 (1.110) | 4 (0.040) | 4/478 | 4.6 | 3.2% | coding (139/459 nt) | gpt | xanthine‑guanine phsophoribosyltransferase |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2871667 | 165 (1.510) | 3 (0.030) | 3/460 | 4.8 | 2.2% | coding (114/480 nt) | ispF | 2‑C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase |
| ? | NC_000913 | = 3488079 | 104 (0.990) | coding (1289/2103 nt) | yhfK | putative transporter YhfK | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 3 (0.030) | 3/476 | 4.9 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2456094 = | 0 (0.000) | intergenic (‑448/+233) | yfcV/sixA | putative fimbrial protein YfcV/phosphohistidine phosphatase SixA | |||||
| * | ? | NC_000913 | = 248339 | 97 (0.890) | 3 (0.030) | 3/472 | 4.9 | 2.8% | intergenic (+205/‑2559) | rayT/dinB | REP‑associated tyrosine transposase/DNA polymerase IV |
| ? | NC_000913 | 4027411 = | 112 (1.040) | intergenic (+183/+198) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase | |||||