mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 4,116 | C→T | T128I (ACC→ATC) | thrC → | threonine synthase |
| RA | 10,659 | C→T | S233N (AGC→AAC) | yaaW ← | putative enzyme‑specific chaperone YaaW |
| RA | 18,600 | C→T | S371F (TCT→TTT) | nhaA → | Na(+):H(+) antiporter NhaA |
| RA | 25,099 | C→T | R903R (CGC→CGT) | ileS → | isoleucine‑‑tRNA ligase |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| RA | 224,625 | T→A | noncoding (855/1542 nt) | rrsH → | 16S ribosomal RNA |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 366,022 | C→G | G95A (GGT→GCT) | lacZ ← | beta‑galactosidase |
| RA | 366,117 | C→T | W63* (TGG→TGA) | lacZ ← | beta‑galactosidase |
| RA | 656,315 | A→C | intergenic (‑347/‑242) | dcuC ← / → pagP | anaerobic C4‑dicarboxylate transporter DcuC/Lipid A palmitoyltransferase |
| RA | 696,470 | C→T | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,043,607 | G→A | L202L (CTG→TTG) | etk ← | protein‑tyrosine kinase Etk |
| RA | 1,050,092 | C→T | S87L (TCA→TTA) L22L (CTC→CTT) |
insA4 → insB4 → |
IS1 family protein InsA IS1 family protein InsB |
| RA | 1,146,079 | C→A | V173F (GTT→TTT) | yceF ← | m(7)GTP pyrophosphatase |
| RA | 1,157,902 | G→T | V12F (GTC→TTC) | ptsG → | glucose‑specific PTS enzyme IIBC component |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,325 | A→G | K401K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| JC JC | 1,219,391 | IS1 (–) +9 bp | intergenic (+190/+2906) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,220,493 | C→T | intergenic (+1292/+1812) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,233,669 | G→A | S350F (TCT→TTT) | nhaB ← | Na(+):H(+) antiporter NhaB |
| RA | 1,290,947 | C→T | Q236* (CAA→TAA) | rssB → | regulator of RpoS |
| RA | 1,292,992 | A→C | intergenic (‑70/‑535) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,374,498 | G→T | G137C (GGC→TGC) | ycjP → | putative ABC transporter membrane subunit YcjP |
| RA | 1,531,689 | A→G | intergenic (‑1185/‑127) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| RA | 1,553,630 | C→A | G70V (GGT→GTT) | adhP ← | ethanol dehydrogenase/alcohol dehydrogenase |
| RA | 1,555,731 | Δ1 bp | intergenic (‑62/+95) | maeA ← / ← sra | malate dehydrogenase (oxaloacetate‑decarboxylating)/ribosome‑associated protein Sra |
| RA | 1,600,234 | C→T | intergenic (‑25/+54) | lsrK ← / ← lsrR | autoinducer‑2 kinase/DNA‑binding transcriptional repressor LsrR |
| RA | 1,601,098 | C→A | S48S (TCG→TCT) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| RA | 1,601,103 | C→T | V47M (GTG→ATG) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| JC | 1,738,830 | Δ19 bp | coding (987‑1005/1026 nt) | purR → | DNA‑binding transcriptional repressor PurR |
| RA | 1,793,377 | Δ1 bp | coding (182/750 nt) | btuD ← | vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,806,073 | A→G | L4S (TTG→TCG) | ydiY ← | acid‑inducible putative outer membrane protein YdiY |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,953,295 | G→A | K198K (AAG→AAA) | cmoA → | carboxy‑S‑adenosyl‑L‑methionine synthase |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,084,054 | G→A | Q433Q (CAG→CAA) | sbcB → | exodeoxyribonuclease I |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,326,483 | C→T | L125L (CTC→CTT) | atoB → | acetyl‑CoA acetyltransferase |
| RA | 2,348,366 | C→A | T328K (ACG→AAG) | nrdB → | ribonucleoside‑diphosphate reductase 1 subunit beta |
| RA | 2,373,902 | C→T | E368K (GAG→AAG) | menE ← | o‑succinylbenzoate‑‑CoA ligase |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,387,701 | G→A | intergenic (+264/+9) | yfbM → / ← yfbN | DUF1877 domain‑containing protein YfbM/uncharacterized protein YfbN |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| RA | 2,411,821 | G→A | A90V (GCC→GTC) | hxpA ← | hexitol phosphatase A |
| RA | 2,423,678 | G→A | intergenic (‑139/+58) | rpnB ← / ← hisP | recombination‑promoting nuclease RpnB/lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| RA | 2,445,509 | G→A | L18F (CTC→TTC) | yfcA ← | putative transporter YfcA |
| JC JC | 2,456,094 | IS1 (–) +9 bp | intergenic (‑448/+225) | yfcV ← / ← sixA | putative fimbrial protein YfcV/phosphohistidine phosphatase SixA |
| RA | 2,464,491 | G→A | L173F (CTT→TTT) | mlaA ← | intermembrane phospholipid transport system ‑ outer membrane lipoprotein MlaA |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,489,528 | G→A | A220V (GCT→GTT) | yfdV ← | putative transport protein YfdV |
| RA | 2,506,941 | G→A | A318A (GCC→GCT) | fryC ← | putative PTS enzyme IIC component FryC |
| RA | 2,559,427 | G→A | R190R (AGG→AGA) | intZ → | putative phage integrase IntZ |
| RA | 2,564,496 | G→T | intergenic (+124/‑27) | yffR → / → yffS | uncharacterized protein YffR/uncharacterized protein YffS |
| RA | 2,589,494 | A→G | S634G (AGC→GGC) | acrD → | multidrug efflux pump RND permease AcrD |
| RA | 2,608,658 | G→A | G58S (GGC→AGC) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,625,695 | C→T | A194V (GCA→GTA) | ppx → | exopolyphosphatase |
| RA | 2,640,130 | G→A | A149V (GCC→GTC) | hisS ← | histidine‑‑tRNA ligase |
| RA | 2,640,445 | G→A | P44L (CCG→CTG) | hisS ← | histidine‑‑tRNA ligase |
| RA | 2,678,665 | C→T | A235T (GCG→ACG) | yphF ← | putative ABC transporter periplasmic binding protein YphF |
| RA | 2,681,333 | C→T | E471E (GAG→GAA) | yphG ← | DUF5107 domain‑containing protein YphG |
| RA | 2,684,810 | C→T | G233D (GGT→GAT) | glyA ← | serine hydroxymethyltransferase |
| RA | 2,702,887 | G→A | A167V (GCA→GTA) | era ← | 30S ribosomal subunit maturation GTPase Era |
| RA | 2,717,705 | G→A | T275I (ACT→ATT) | yfiF ← | putative methyltransferase YfiF |
| RA | 2,732,992 | G→A | I394I (ATC→ATT) I394I (ATC→ATT) |
clpB ← clpB ← |
chaperone protein ClpB chaperone protein ClpB |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 3,040,842 | 2 bp→AA | coding (228‑229/267 nt) | sdhE ← | FAD assembly factor |
| RA | 3,043,360 | G→A | I88I (ATC→ATT) | yqfB ← | N(4)‑acetylcytidine amidohydrolase |
| RA | 3,071,412 | C→T | intergenic (‑168/+47) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase class II/phosphoglycerate kinase |
| RA | 3,089,109 | A→T | K276* (AAA→TAA) | galP → | galactose:H(+) symporter |
| RA | 3,132,532 | G→A | P227P (CCC→CCT) | yghR ← | putative ATP‑binding protein YghR |
| RA | 3,167,566 | C→T | V51V (GTG→GTA) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| MC JC | 3,349,206 | Δ16,350 bp | IS5‑mediated | [mtgA]–[yhcE] | [mtgA], elbB, arcZ, arcB, yhcC, gltB, gltD, gltF, yhcA, yhcD, [yhcE] |
| RA | 3,373,606 | A→G | intergenic (‑30/+92) | nanA ← / ← nanR | N‑acetylneuraminate lyase/NanR |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,428,918 | Δ1 bp | intergenic (‑156/‑318) | rrsD ← / → yrdA | 16S ribosomal RNA/hexapeptide repeat‑containing protein YrdA |
| RA | 3,428,923 | Δ1 bp | intergenic (‑161/‑313) | rrsD ← / → yrdA | 16S ribosomal RNA/hexapeptide repeat‑containing protein YrdA |
| RA | 3,428,927 | T→G | intergenic (‑165/‑309) | rrsD ← / → yrdA | 16S ribosomal RNA/hexapeptide repeat‑containing protein YrdA |
| RA | 3,432,105 | C→T | L120L (CTG→CTA) | smg ← | DUF494 domain‑containing protein Smg |
| RA | 3,441,421 | G→T | N85K (AAC→AAA) | rpsD ← | 30S ribosomal subunit protein S4 |
| RA | 3,443,961 | G→A | A46V (GCC→GTC) | secY ← | Sec translocon subunit SecY |
| RA | 3,443,980 | G→A | P40S (CCG→TCG) | secY ← | Sec translocon subunit SecY |
| RA | 3,452,022 | G→A | P89S (CCG→TCG) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,452,218 | G→A | F23F (TTC→TTT) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,457,378 | C→T | L334L (CTC→CTT) | gspD → | Type II secretion system protein GspD |
| RA | 3,458,245 | A→C | S623S (TCA→TCC) | gspD → | Type II secretion system protein GspD |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,494,679 | C→T | T223T (ACC→ACT) | nirB → | nitrite reductase (NADH) large subunit |
| RA | 3,525,566 | T→C | intergenic (+143/+23) | mrcA → / ← nudE | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE |
| RA | 3,537,999 | C→T | F205F (TTC→TTT) | yhgF → | putative RNA‑binding protein YhgF |
| RA | 3,555,047 | 2 bp→TC | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,557,868 | Δ1 bp | coding (212/1227 nt) | rtcB ← | RNA‑splicing ligase |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,606,891 | C→T | F147F (TTC→TTT) | zntA → | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| RA | 3,617,379 | T→A | I122K (ATA→AAA) | nikD → | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| RA | 3,624,545 | T→A | D56E (GAT→GAA) | yhhI → | putative transposase |
| RA | 3,631,356 | 2 bp→AG | coding (1234‑1235/1623 nt) | yhiJ ← | DUF4049 domain‑containing protein YhiJ |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,672,236 | T→A | intergenic (‑342/‑178) | yhjB ← / → rcdB | putative DNA‑binding transcriptional regulator YhjB/putative DNA‑binding transcriptional regulator YhjC |
| RA | 3,679,508 | C→T | T30T (ACC→ACT) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,686,705 | G→A | F823F (TTC→TTT) | bcsC ← | cellulose synthase outer membrane channel |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,712,407 | G→A | G176G (GGC→GGT) | yhjY ← | putative outer membrane protein YhjY |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,955 | 2 bp→AA | coding (810‑811/1323 nt) | xylA ← | xylose isomerase |
| JC JC | 3,731,420 | IS1 (–) +9 bp | coding (290‑298/993 nt) | xylF → | xylose ABC transporter periplasmic binding protein |
| RA | 3,769,447 | G→A | E35K (GAA→AAA) | yibV → | PF15596 family protein YibV |
| RA | 3,773,040 | (G)6→4 | coding (760‑761/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,783,983 | G→A | S49F (TCC→TTC) | secB ← | protein export chaperone SecB |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,865,885 | A→G | V130A (GTT→GCT) | yidE ← | putative transport protein YidE |
| RA | 3,880,358 | G→A | F288F (TTC→TTT) | recF ← | recombination mediator protein RecF |
| RA | 3,899,195 | C→T | E67K (GAA→AAA) | yieK ← | putative glucosamine‑6‑phosphate deaminase YieK |
| RA | 3,903,234 | G→A | V156V (GTC→GTT) | bglB ← | 6‑phospho‑beta‑glucosidase B |
| RA | 3,961,662 | G→T | G329V (GGC→GTC) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,965,174 | G→A | H153Y (CAC→TAC) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,968,683 | G→A | M256I (ATG→ATA) | rfe → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 3,969,748 | T→C | S240P (TCG→CCG) | wzzE → | enterobacterial common antigen polysaccharide co‑polymerase |
| RA | 3,999,664 | C→T | S561L (TCG→TTG) | uvrD → | DNA helicase II |
| RA | 4,009,698 | G→A | A177T (GCA→ACA) | pldB → | lysophospholipase L2 |
| RA | 4,017,197 | C→T | intergenic (+5/‑136) | udp → / → rmuC | uridine phosphorylase/putative recombination limiting protein RmuC |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,108,758 | T→C | intergenic (+244/‑76) | pfkA → / → sbp | 6‑phosphofructokinase 1/sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,156,839 | G→A | intergenic (+50/‑11) | argB → / → argH | acetylglutamate kinase/argininosuccinate lyase |
| RA | 4,157,116 | Δ1 bp | coding (267/1374 nt) | argH → | argininosuccinate lyase |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,202,259 | G→A | G112R (GGG→AGG) | zraS → | sensor histidine kinase ZraS |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,400,254 | C→T | intergenic (+52/‑34) | miaA → / → hfq | tRNA dimethylallyltransferase/RNA‑binding protein Hfq |
| RA | 4,423,337 | C→T | S164S (TCC→TCT) | ulaE → | L‑ribulose‑5‑phosphate 3‑epimerase UlaE |
| RA | 4,449,586 | G→A | P23S (CCG→TCG) | ppa ← | inorganic pyrophosphatase |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,512,054 | C→T | A121T (GCG→ACG) | fecD ← | ferric citrate ABC transporter membrane subunit FecD |
| RA | 4,514,334 | C→T | intergenic (‑26/+19) | fecB ← / ← fecA | ferric citrate ABC transporter periplasmic binding protein/ferric citrate outer membrane transporter |
| RA | 4,519,952 | C→T | G125R (GGG→AGG) | yjhU ← | putative DNA‑binding transcriptional regulator YjhU |
| RA | 4,525,476 | C→T | A110T (GCT→ACT) | yjhI ← | putative DNA‑binding transcriptional regulator YjhI |
| RA | 4,526,033 | C→T | intergenic (‑230/+73) | yjhI ← / ← sgcR | putative DNA‑binding transcriptional regulator YjhI/putative DNA‑binding transcriptional regulator SgcR |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,538,145 | C→T | W207* (TGG→TGA) | nanM ← | N‑acetylneuraminate mutarotase |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,568,857 | C→T | intergenic (‑130/+1305) | ytiE ← / ← yjiR | protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR |
| RA | 4,587,426 | C→T | L160L (CTG→TTG) | mrr → | Type IV methyl‑directed restriction enzyme EcoKMrr |
| MC JC | 4,593,901 | Δ54 bp | coding (769‑822/1362 nt) | lgoT ← | galactonate:H(+) symporter |
| RA | 4,617,547 | C→T | N75N (AAC→AAT) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,624,715 | C→T | A25A (GCG→GCA) | ytjB ← | putative inner membrane protein Smp |
| RA | 4,634,232 | C→T | L146L (CTG→TTG) | ytjC → | putative phosphatase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 583234 | 583691 | 458 | 10 [6] | [8] 9 | [appY] | [appY] |
| * | * | ÷ | NC_000913 | 1196375 | 1211456 | 15082 | 9 [2] | [8] 9 | C0293–mcrA | C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1632712 | 1633489–1633251 | 540–778 | 9 [8] | [8] 9 | ynfT–ydfK | ynfT,ydfK |
| * | * | ÷ | NC_000913 | 2903699 | 2903868 | 170 | 9 [8] | [6] 9 | ygcE/queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| * | * | ÷ | NC_000913 | 3423885–3424234 | 3424409–3424238 | 5–525 | 10 [8] | [8] 9 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3797089 | 3797410 | 322 | 10 [8] | [8] 10 | waaL | O‑antigen ligase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 26 (0.240) | 26/470 | 1.8 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||