mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 313 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,650,266 | 0 | G | A | 66.2% | 441.7 / inf | 345 | P10P (CCG→CCA) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,248 | 0 | T | C | 66.0% | 389.5 / inf | 341 | I4I (ATT→ATC) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,191 | 0 | T | C | 62.1% | 254.3 / inf | 298 | A419A (GCT→GCC) | arsB | arsenite/antimonite:H(+) antiporter |
| * | NC_000913 | 3,650,182 | 0 | G | A | 60.9% | 233.4 / inf | 300 | V416V (GTG→GTA) | arsB | arsenite/antimonite:H(+) antiporter |
| * | NC_000913 | 3,650,369 | 0 | G | C | 59.6% | 250.2 / inf | 301 | V45L (GTC→CTC) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,383 | 0 | C | G | 59.5% | 250.3 / inf | 296 | A49A (GCC→GCG) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,341 | 0 | G | T | 58.8% | 163.8 / inf | 301 | L35L (CTG→CTT) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,344 | 0 | A | G | 58.8% | 179.8 / inf | 301 | E36E (GAA→GAG) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,354 | 0 | A | T | 58.8% | 243.5 / inf | 302 | T40S (ACG→TCG) ‡ | arsC | arsenate reductase |
| * | NC_000913 | 3,650,334 | 0 | A | T | 58.6% | 245.6 / inf | 303 | H33L (CAT→CTT) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,356 | 0 | G | A | 58.5% | 213.3 / inf | 302 | T40T (ACG→ACA) ‡ | arsC | arsenate reductase |
| * | NC_000913 | 3,650,365 | 0 | A | G | 58.4% | 175.7 / inf | 303 | E43E (GAA→GAG) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,353 | 0 | A | T | 58.3% | 230.3 / inf | 300 | P39P (CCA→CCT) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,327 | 0 | A | G | 58.2% | 167.2 / inf | 304 | I31V (ATT→GTT) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,350 | 0 | G | A | 58.1% | 196.4 / inf | 302 | P38P (CCG→CCA) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,326 | 0 | T | C | 58.1% | 155.0 / inf | 303 | T30T (ACT→ACC) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,332 | 0 | C | T | 58.1% | 216.7 / inf | 303 | I32I (ATC→ATT) | arsC | arsenate reductase |
| * | NC_000913 | 3,650,338 | 0 | T | C | 57.9% | 126.3 / inf | 303 | Y34Y (TAT→TAC) | arsC | arsenate reductase |
| * | NC_000913 | 1,634,382 | 0 | T | C | 57.8% | 6.2 / 58.0 | 45 | K168K (AAA→AAG) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 3,650,408 | 0 | C | T | 57.6% | 171.2 / inf | 264 | L58L (CTG→TTG) | arsC | arsenate reductase |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3970850 | 54 (0.530) | 38 (0.370) | 26/598 | 3.2 | 41.3% | coding (718/1131 nt) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 29 (0.290) | 23/596 | 3.7 | 32.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 3970846 = | 60 (0.590) | coding (714/1131 nt) | wecB | UDP‑N‑acetylglucosamine 2‑epimerase | |||||
| * | ? | NC_000913 | = 566774 | 101 (0.990) | 46 (0.450) | 19/594 | 4.5 | 30.4% | pseudogene (91/93 nt) | renD | protein RenD |
| ? | NC_000913 | 568036 = | 110 (1.090) | pseudogene (2/213 nt) | renD | protein RenD | |||||
| * | ? | NC_000913 | = 696741 | 66 (0.650) | 12 (0.160) | 11/442 | 5.0 | 18.1% | intergenic (‑1/+15) | metU/glnW | tRNA‑Met/tRNA‑Gln |
| ? | NC_000913 | 697135 = | 60 (0.800) | intergenic (‑2/+378) | metT/asnB | tRNA‑Met/asparagine synthetase B | |||||
| * | ? | NC_000913 | = 4606166 | 104 (1.020) | 8 (0.110) | 8/420 | 5.8 | 10.8% | intergenic (‑1/+34) | leuV/leuP | tRNA‑Leu/tRNA‑Leu |
| ? | NC_000913 | 4606403 = | 59 (0.820) | intergenic (‑2/+266) | leuQ/rsmC | tRNA‑Leu/16S rRNA m(2)G1207 methyltransferase | |||||
| * | ? | NC_000913 | = 2947467 | 89 (0.870) | 6 (0.080) | 6/432 | 6.9 | 8.2% | intergenic (+4/‑30) | metZ/metW | tRNA‑Met/tRNA‑Met |
| ? | NC_000913 | 2947688 = | 70 (0.950) | intergenic (+5/+69) | metV/amiC | tRNA‑Met/N‑acetylmuramoyl‑L‑alanine amidase C | |||||
| * | ? | NC_000913 | = 3648146 | 137 (1.340) | 7 (0.090) | 6/482 | 7.5 | 6.4% | intergenic (+2/‑148) | agrA/agrB | small RNA AgrA/small regulatory RNA AgrB |
| ? | NC_000913 | 3648378 = | 94 (1.140) | intergenic (+3/‑150) | agrB/arsR | small regulatory RNA AgrB/DNA‑binding transcriptional repressor ArsR | |||||
| * | ? | NC_000913 | = 1287329 | 59 (0.580) | 5 (0.070) | 4/424 | 7.9 | 11.1% | intergenic (‑1/+209) | tyrV/tyrT | tRNA‑Tyr/tRNA‑Tyr |
| ? | NC_000913 | 1287624 = | 38 (0.530) | intergenic (‑2/+158) | tyrT/purU | tRNA‑Tyr/formyltetrahydrofolate deformylase | |||||
| * | ? | NC_000913 | = 781446 | 50 (0.490) | 4 (0.050) | 4/442 | 8.1 | 8.9% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781655 = | 45 (0.600) | intergenic (+3/‑430) | lysQ/nadA | tRNA‑Lys/quinolinate synthase | |||||
| * | ? | NC_000913 | = 1286906 | 54 (0.530) | 7 (0.070) | 6/558 | 8.4 | 11.9% | coding (198/276 nt) | ychS | putative uncharacterized protein YchS |
| ? | NC_000913 | 1287557 = | 53 (0.560) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||