New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2290113	NA (NA)	25 (0.520)	23/488	1.0	65.8%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	3890671 =	13 (0.270)					coding (436/1248 nt)	tnaB	tryptophan:H(+) symporter TnaB

TTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289872‑2290113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAAACGCAAAG  >  NC_000913/3890671‑3890905                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGC                                                                                                                                                                                                                                     <  1:152577/250‑1                  GCCGGCCATTACCCGCCTTGGGGTAAAACGGCTCGATGACTTCCCCCATTTTTTGCCATGGCAGAATCTGCTCCATGCGGGGCAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATT                                                                                                                                                                                                                   <  1:25292/251‑1                      GCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTC                                                                                                                                                                                                               >  1:191983/1‑251                       CCATTACCAGCCTTCGGGTACAACGGCTAGATGACTTCCACCATGTTTTCCCATGGCAGAATCTGCTCCATGCGGGACAAGAACATCTCTTTTCTGGTCTGAAGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCAAGATGACAAACATGATATCATATCAGGGACTTGTTCGAACCTTCCTTAGCCGCCAGACGTATTACCTCATTGTTCC                                                                                                                                                                                                              >  2:312419/1‑251                            ACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAGTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCGTATCAGGGACTTGTTCGCAGCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGG                                                                                                                                                                                                          <  1:284808/250‑1                                             cCGGCTCGATGTCTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGTTGGACAAGAAAATCTCTTTTCTGGTCTGACCGCGCTTACTGCTCAATTCACTGTCGGTGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGATAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGTCGCCAGTCGTATTACCTCATGGTTCCTCGGGCTGAAGATTATCTCCTT                                                                                                                                                                                        <  1:447028/250‑1                                                   CGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGAT                                                                                                                                                                                  <  1:388281/251‑1                                                   CGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGA                                                                                                                                                                                   <  1:167734/250‑1                                                               gcatgctttgccgcaGCAGAATCTGCTCCATGCGGGACAAGAAAATCTTTTTTCTGGTCTGACGGCGCCTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTTTCTCCTTTGTGATCGTGTTTGGTTt                                                                                                                                                                      >  2:326498/16‑250                                                               CCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTGCTGTTCTGACGGCGCTTACTACTGAATTCGCTGTCGGCGAAGGTAAGTTCATGACTCATGATGAACCCTGTTCTATGGCTCCGGATGACAAGCATGATCTCATATCAGGGACTCGTTCGCTCCTTCCTTAGCCGCCATTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTC                                                                                                                                                                      <  1:491193/251‑1                                                                                 GAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGA                                                                                                                                                    <  2:208221/251‑1                                                                                                                TTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGCTCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCC                                                                                                                     >  2:203060/1‑251                                                                                                                           GACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGTGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACGTCATTCTGCGCGACGCCTCCAGCTCCACTGCGGGAAC                                                                                                          <  1:181448/251‑1                                                                                                                                      CTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCC                                                                                               >  1:178362/1‑251                                                                                                                                                          GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTG                                                                           <  1:272663/251‑1                                                                                                                                                                                 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCC                                                                         <  2:397422/230‑1                                                                                                                                                                                 TGAACCATGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCC                                                                         >  1:397422/1‑230                                                                                                                                                                                                GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTACACGGCCATAT                                     >  1:338897/1‑251                                                                                                                                                                                                GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTGTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATA                                      <  2:73481/250‑1                                                                                                                                                                                                         gGACAAACAGTATCTAATATCAGTGACTGTTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTTTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCTGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCT                            <  2:365782/250‑1                                                                                                                                                                                                                           ATCAGGGACTTGTTCGCACCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAA          <  2:178362/251‑1                                                                                                                                                                                                                            TCAGGGACTTGTTCGCGCCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTTTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAA          <  1:203060/250‑1                                                                                                                                                                                                                             CAGGGACTTGTTCGCCCCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTGGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAAAC        <  2:196429/251‑1                                                                                                                                                                                                                                 GACTTGTTCGCACCTTCCTTAGCCGCAAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCACGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCTGCCTGATTATTTGCTATGGAAAACGCA     >  2:204912/1‑250                                                                                                                                                                                                                                     TGTTCGCCCCTTCCTTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAAACGCAAAG  <  2:59932/249‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2289872‑2290113 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCCGCCAGTCGTATTACCTCATTGTTCCTCGGGCTGAAGATTATCTCCTTTGTGATCGTGTTTGGTTCTTTTTTCTTCCAGGTCGATTACTCCATTCTGCGCGACGCCACCAGCTCCACTGCGGGAACGTCTTACTTCCCGTATATCTTTATGGCTTTGCCGGTGTGTCTGGCGTCATTTGGTTTCCACGGCAATATTCCCAGCCTGATTATTTGCTATGGAAAACGCAAAG  >  NC_000913/3890671‑3890905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.