mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 295 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,097,494 | 0 | T | A | 77.3% | 158.9 / 60.8 | 80 | intergenic (+665/+71) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| * | NC_000913 | 1,634,404 | 0 | A | G | 68.8% | 19.9 / 46.8 | 61 | I161T (ATC→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,676 | 0 | A | G | 66.5% | 55.7 / 214.0 | 209 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,661 | 0 | C | G | 66.2% | 51.3 / 249.5 | 216 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,597 | 0 | C | A | 65.8% | 50.3 / 228.5 | 222 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,578 | 0 | T | C | 65.7% | 41.4 / 221.7 | 211 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,699 | 0 | A | C | 65.1% | 44.1 / 182.7 | 190 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,115 | 0 | C | T | 64.9% | 345.7 / 260.7 | 266 | intergenic (+29/+136) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,634,569 | 0 | A | T | 64.7% | 32.8 / 284.2 | 201 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,302 | 0 | C | T | 64.6% | 332.7 / 314.9 | 291 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,634,484 | 0 | G | T | 64.6% | 18.8 / 137.7 | 127 | N134K (AAC→AAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,119 | 0 | A | G | 64.5% | 264.7 / 296.3 | 265 | intergenic (+33/+132) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 580,120 | 0 | C | T | 64.4% | 328.3 / 270.0 | 268 | intergenic (+34/+131) | ybcW/ylcI | uncharacterized protein YbcW/DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,634,571 | 0 | C | T | 64.4% | 34.6 / 216.0 | 202 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,658 | 0 | A | G | 64.1% | 34.7 / 238.5 | 221 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,724 | 0 | G | A | 63.9% | 26.7 / 177.1 | 172 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 580,020 | 0 | G | A | 63.8% | 339.1 / 303.7 | 291 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 1,634,482 | 0 | T | C | 63.0% | 12.3 / 148.0 | 127 | N135S (AAC→AGC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,388 | 0 | T | G | 63.0% | 1.1 / 54.3 | 54 | A166A (GCA→GCC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 581,042 | 0 | T | G | 62.5% | 7.0 / 230.8 | 208 | L70R (CTG→CGG) | nohD | putative DNA‑packaging protein NohD |
| Marginal new junction evidence (lowest skew 10 of 56 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 31 (0.300) | 25/598 | 3.4 | 26.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2462627 | 85 (0.820) | coding (1322/1341 nt) | fadL | long‑chain fatty acid outer membrane channel/bacteriophage T2 receptor | |||||
| * | ? | NC_000913 | = 4310151 | 58 (0.560) | 31 (0.300) | 23/596 | 3.8 | 34.8% | coding (830/1533 nt) | alsA | D‑allose ABC transporter ATP binding subunit |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 26 (0.250) | 23/598 | 3.8 | 30.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 4310147 = | 59 (0.570) | coding (834/1533 nt) | alsA | D‑allose ABC transporter ATP binding subunit | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 23 (0.220) | 21/598 | 4.2 | 13.3% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3653447 = | 150 (1.450) | pseudogene (212/478 nt) | yhiS | putative uncharacterized protein YhiS | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 24 (0.230) | 19/598 | 4.6 | 17.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3360850 | 114 (1.100) | intergenic (+234/‑326) | gltD/gltF | glutamate synthase subunit GltD/periplasmic protein GltF | |||||
| * | ? | NC_000913 | = 1208763 | 82 (0.800) | 21 (0.200) | 19/596 | 4.6 | 20.4% | coding (357/603 nt) | tfaE | putative tail fiber assembly protein TfaE |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 381260 = | NA (NA) | 25 (0.240) | 19/594 | 4.6 | 15.4% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 806578 | 137 (1.330) | coding (704/1284 nt) | ybhC | outer membrane lipoprotein YbhC | |||||
| * | ? | NC_000913 | 270541 = | NA (NA) | 26 (0.250) | 19/598 | 4.6 | 22.8% | noncoding (1/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | = 1790403 | 88 (0.850) | coding (842/1437 nt) | selO | protein adenylyltransferase SelO | |||||
| * | ? | NC_000913 | 566777 = | NA (NA) | 19 (0.180) | 18/596 | 4.8 | NA | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 575728 | NA (NA) | noncoding (58/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 275093 | NA (NA) | 18 (0.180) +GA |
18/594 | 4.8 | NA | noncoding (57/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 315229 = | NA (NA) | noncoding (1/1255 nt) | IS3 | repeat region | |||||