Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,977,245	Δ199 bp		[motR]–[flhC]	[motR], [flhC]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1977245	1977443	199	7 [0]	[0] 7	[motR]–[flhC]	[motR],[flhC]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1977244	0 (0.000)	7 (0.470)	6/294	0.7	100%	noncoding (59/95 nt)	motR	small RNA MotR
	?	NC_000913	1977444 =	0 (0.000)					coding (401/579 nt)	flhC	DNA‑binding transcriptional dual regulator FlhC

CCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGAAAGTTTACGTCTTTTTACTGCCCGGGATGGCGGTTGACATAAGCTGCAGGCAAAGCTGCCAACAGGCTGGTGAGCGTGGGTAATAAAATTGCCGCCG  >  NC_000913/1977105‑1977425                                                                                                                                            |                                                                                                                                                                                      ccGAGAACAACCAGTGAACCTAAGAAGATAAGCACGACATCATCCTTCCGCTGTTGACCATGACAGGATGTTCAGGCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCACTGCTGGAAagttgcagtaatccactttcaacaaaccgcaccaatgtccaggcacgggttaattccagcagt                                                                                                                        <  1:294877‑M1/203‑64 (MQ=255)                                     nnnnnnnnntnccnntgttnACCATGACAGGATGTTCAGTCGTCNGGCGTTAACGCGCGATTGGGGCAAAAAAAAGNANCGGTACGTCGTTACCGCTGCTGGAAagttgcagtaatccactttcaacnaaccgcaccantgtnnaggcncngnttaatgccagcagtggtccttcttctgctngtgggcactgttcaaggtataaanngtnnnctnngatca                                                                 <  2:254958‑M1/213‑119 (MQ=255)                                                         aCCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCTCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAagttgcaggaatccactttcaacaaaccgcaccaatgtccaggcacgggttaatgccagcagtggtccttcttctgcttg                                                                                                       <  1:57763‑M1/164‑81 (MQ=255)                                                                                    cGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAagttgcagtaatccactttcaacaaaccgcaccaatgtccaggcacgggttaatgccagcagt                                                                                                                        >  1:283516‑M1/1‑57 (MQ=255)                                                                                            cgcgATTGGGGCAAAAAAGAGCAGCGGTACGTCGTTACCGCTGCTGGAAagttgcagtaatccactttcaacaaaccgcaccaatgtccatgcacggtttaatgccagcagtggtccttcttctgcttgtgggcactgttcaaggtataaacggtaggctttgatca                                                                 <  1:348859‑M1/167‑119 (MQ=255)                                                                                            cgcgATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAagttgcagtaatccactttcaacaaaccgcaccaatgtccaggcacgggttaatgccagcagtggtccttcttctgcttgtgggcactgttcaaggtataaacggtaggctttgatcaccgcatcgacgccattacacaaaccggttttcagtaaaaactgccatgcattacagaacatcg  >  1:135005‑M1/1‑49 (MQ=255)                                                                                                               agcagcGGTACGTCGTTACCGCTGCTGGAAagttgaagtaatccactgtcaacaaaccgcaccaatggccaggcacgggttaattccagcagtggtccttcttctgcttgtgggcgctggtcaaggtataaacggtaggcgtttatcaccgcatcgacgccattacacaaaccggttttcagtaaaaactgcc                    <  1:192467‑M1/193‑164 (MQ=255)                                                                                                                                            |                                                                                                                                                                                      CCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCTGTACTCTCTGTTCATCCAGCAGTTGTGGGATAATATCGGCAGGATTCTGGGAAAGTTTACGTCTTTTTACTGCCCGGGATGGCGGTTGACATAAGCTGCAGGCAAAGCTGCCAACAGGCTGGTGAGCGTGGGTAATAAAATTGCCGCCG  >  NC_000913/1977105‑1977425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑