| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,977,245 | Δ199 bp | [motR]–[flhC] | [motR], [flhC] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1977245 | 1977443 | 199 | 7 [0] | [0] 7 | [motR]–[flhC] | [motR],[flhC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1977244 | 0 (0.000) | 7 (0.470) | 6/294 | 0.7 | 100% | noncoding (59/95 nt) | motR | small RNA MotR |
| ? | NC_000913 | 1977444 = | 0 (0.000) | coding (401/579 nt) | flhC | DNA‑binding transcriptional dual regulator FlhC | |||||
GGATAATATCGGCAGGATTCTGGGAAAGTTTACGTCTTTTTACTGCCCGGGATGGCGGTTGACATAAGCTGCAGGCAAAGCTGCCAACAGGCTGGTGAGCGTGGGTAATAAAATTGCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCG > NC_000913/1977304‑1977624 | ccgagaacaaccagtgaacctaagaagataagcacgacatcatccttccgctgttgaccatgacaggatgttcaggcgtcaggcgttaacgcgcgattggggcaaaaaaaagcagcggtacgtcgttaccactgctggaaAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATTCCAGCAGt < 1:294877‑M2/63‑1 (MQ=255) nnnnnnnnntnccnntgttnaccatgacaggatgttcagtcgtcnggcgttaacgcgcgattggggcaaaaaaaagnancggtacgtcgttaccgctgctggaaAGTTGCAGTAATCCACTTTCAACNAACCGCACCANTGTNNAGGCNCNGNTTAATGCCAGCAGTGGTCCTTCTTCTGCTNGTGGGCACTGTTCAAGGTATAAANNGTNNNCTNNGATCa < 2:254958‑M2/118‑1 (MQ=255) accatgacaggatgttcagtcgtcaggcgttaacgctcgattggggcaaaaaaaagcagcggtacgtcgttaccgctgctggaaAGTTGCAGGAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATGCCAGCAGTGGTCCTTCTTCTGCTtg < 1:57763‑M2/80‑1 (MQ=255) cgttaacgcgcgattggggcaaaaaaaagcagcggtacgtcgttaccgctgctggaaAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATGCCAGCAGt > 1:283516‑M2/58‑120 (MQ=255) cgcgattggggcaaaaaagagcagcggtacgtcgttaccgctgctggaaAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCATGCACGGTTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCa < 1:348859‑M2/118‑1 (MQ=255) cgcgattggggcaaaaaaaagcagcggtacgtcgttaccgctgctggaaAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCg > 1:135005‑M2/50‑230 (MQ=255) agcagcggtacgtcgttaccgctgctggaaAGTTGAAGTAATCCACTGTCAACAAACCGCACCAATGGCCAGGCACGGGTTAATTCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCGCTGGTCAAGGTATAAACGGTAGGCGTTTATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGcc < 1:192467‑M2/163‑1 (MQ=255) | GGATAATATCGGCAGGATTCTGGGAAAGTTTACGTCTTTTTACTGCCCGGGATGGCGGTTGACATAAGCTGCAGGCAAAGCTGCCAACAGGCTGGTGAGCGTGGGTAATAAAATTGCCGCCGCAGCAGTTGCAGCTGGAAAGTTGCAGTAATCCACTTTCAACAAACCGCACCAATGTCCAGGCACGGGTTAATGCCAGCAGTGGTCCTTCTTCTGCTTGTGGGCACTGTTCAAGGTATAAACGGTAGGCTTTGATCACCGCATCGACGCCATTACACAAACCGGTTTTCAGTAAAAACTGCCATGCATTACAGAACATCG > NC_000913/1977304‑1977624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |