| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 305,664 | IS2 (–) +5 bp | coding (1150‑1154/1644 nt) | ecpD ← | fimbrial adhesin EcpD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 305664 = | 0 (0.000) | 13 (0.850) | 8/304 | 0.4 | 100% | coding (1154/1644 nt) | ecpD | fimbrial adhesin EcpD |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 305668 | 0 (0.000) | 18 (1.160) | 15/308 | 0.1 | 100% | coding (1150/1644 nt) | ecpD | fimbrial adhesin EcpD |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CTCCGTTGCGGGTAATAAAGGAAAGTGTCGCCGGGAACGGTACTTTCGCCTTACCGTCATCGGAGCTGAAGACACAATAGGAGCGCCCGCCAATCACCTGCGCGGGTCCGGTCACCTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGTTGAAGGTGTAGTAATAGGCGGTATTGC > NC_000913/305419‑305892 | cTCCGTTGCGGGTAATAAAGGAAAGTGTCGCCGGGAACGGTACTTTCGACTTACCGTCATCGGAGCTGAAGACACCATAGGAGCGCCCGCCAATCACCTGCGCGGGTCCGGTCCCCTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGAAATAGCCGAACTCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCCCCACGGTGTCTGAGTCTATTCATCGGAGATAATACTGATt > 1:180525‑M1/1‑250 (MQ=255) ccgggcaacgagggagtccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGCTAATCAGCGTGTTGGAGGTAGaa < 1:79583‑M1/48‑1 (MQ=255) gagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATaccagcn > 1:91682‑M1/190‑250 (MQ=255) tGAAGACACAATAGGAGCGCCCGCCAATCACCTGCACGGGTCCGGTCACCTTGATCAGCACTTCGTCGGCAGCTGTTTTACAGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTAGCCGCTGCCAACATATCCCTCCCGCGACGGTGTTTGAGTCTATTCATCGGAGATAATACTGATtggctttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgc > 1:194256‑M1/1‑184 (MQ=255) ccgccAATCACCTGCGCGGGTCCGGTCACCTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTAAGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgata > 1:313853‑M1/1‑164 (MQ=255) gccAATCACCTGCGCGGGTCCGGTCACCTTGATCAGCCCTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGCCTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc > 1:140917‑M1/1‑162 (MQ=255) tgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgtctagtctaaaaactagtattaagactatcacttatttaagtgatattggttggctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTg > 1:233210‑M1/152‑250 (MQ=255) gatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagatgcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATacn > 1:285856‑M1/149‑205 (MQ=255) gatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaataatctgttctccaatgactagtctaaaaactcgtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCAt < 1:143707‑M1/55‑1 (MQ=255) gtgtggaacgccgtctgcgtttatccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgctattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGc < 1:82798‑M1/91‑1 (MQ=255) cGGTCACCTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgcc > 1:81313‑M1/1‑142 (MQ=255) cTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCTCGACGTTGTCTGAGTATATTCATCGTAGATAATACTGATtggatttgcccctataggtccagacatcttttatcacttaacccattacaagcccgctgccgcagatatgcccgtggcgagcgataacccagc < 1:243330‑M1/228‑94 (MQ=255) gccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagaattaagactatcccttatttaagtgatattggttgtctggagattcagggggcaagcctaCTGAGGCTGAAATCACGGGGTTTGATAATAAGCGTGTTGGAGGAAGAAAATTCATACAAGCCAGACTCCGGTGATGGGGTGTTTTGAAAGCGAAGGTTGAATAGATCTTTGGGGTTGATATCg < 1:178998‑M1/123‑1 (MQ=255) ccctannacnnnaannatctgttctccaatgactagtctnaaaactagtattaagactatcacttatttnantnatatnngttntctggagattnagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGNGNTGGAGGTAGAAAATTCATACCAGCCAGACTCNGGTGATGTGGTGTTCTGAAAGCGANAGTTNNATNg < 2:259537‑M1/104‑1 (MQ=255) cancaancnncnnttcnccaatgactagtctaaaaactnntattaagacnatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTNATGCTGAAANNACNGGGTTNGNNNANNNGCNTGTTGGAGGTAGAAAAGTCNTANNAGCCAGNCTCCGGTGATGTGGTGTGCTGAAAGc > 2:82798‑M1/102‑192 (MQ=255) aCCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACAGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgcggcagatattcccgtggcgagcgagaacccagcgctctatgcggatgccattcgttataatgctcgaacgcctctgcaaggttct < 1:356489‑M1/250‑146 (MQ=255) gtTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgn < 1:62213‑M1/203‑109 (MQ=255) aCGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctctatttccagacatctgttatctcttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaac < 1:59936‑M1/251‑160 (MQ=255) ttcagacttgtgctcttcccatctactcgccgctgccaacatatccctcCCTCGACGGTGTCTGAGTATATTCATCGTAGATAATACTGATtggatttgcccctatattgccagacatctgttatcacttaacccattacaagcccgctgcctcagatattcccgtgacgagcgataacccagcgcactatgcggatgccattcgttataaacctcgaacgcctctgcaaggttctttgctgccgttaac < 1:180224‑M1/226‑160 (MQ=255) gAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCNGCGNCGGTNGCNGAGTATATTCATCGGNGATAATACTGATtggatttgcccctatatttccagacatctgttnncnnntnacccatta < 2:243557‑M1/129‑49 (MQ=255) gAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggctttgcacctatatttccagacatctgttatcacttaacccatta > 1:243557‑M1/1‑81 (MQ=255) aTCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctgtgctgccgttaacccgtctggtttggg < 1:297359‑M1/251‑174 (MQ=255) aaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTTGTGTTCTGAAAGCGAAAGTTGAAGAGATCTTTGGTGTTGATAGCGCTGATCCCGAGGTTCACCATCTGCGTAAAGAAGTTGCTCGAGAAGAAAACATAGAtcn > 1:31480‑M1/71‑250 (MQ=255) aGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGCGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgttgccg > 1:197121‑M1/1‑74 (MQ=255) ccAACATATCCCCCCCGCGACGGTGTCTGAGTAGATTCATCGGAGATAATACTGATtggatttgcccctatatgtccagacatctgttatctcttaacccattacaagcccgctgccgcatatatgcccgtgtcgagcgagaacccagcgcactatgc < 1:225382‑M1/158‑103 (MQ=255) ccctcccGCGACGGTGTCTTAGTATATTCATCGGAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgn < 1:219502‑M1/250‑204 (MQ=255) aagtgatattggttgtctggagattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTTGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGTTGAAGgtgt > 1:259537‑M1/41‑251 (MQ=255) ngcnggtntnNGNNTATNTTCATCGGAGATAATACTGATnngatttgcccntatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagntattcccgtnncgngcgatnannnannncantatgcggatgccattcgttntanngctcgancgcctctgcaaggttctttgctgccg < 2:81313‑M1/189‑155 (MQ=255) gTATATTCATCGTAGATAATACTGATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcac < 1:310547‑M1/123‑98 (MQ=255) agattcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGTTGAagn > 1:101807‑M1/21‑227 (MQ=255) tcagggggccagtctaCTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGTTGAAGGTGTAGTAATAGGCGGTATtgn > 1:101975‑M1/17‑244 (MQ=255) cTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGtt > 1:175542/1‑203 (MQ=255) | CTCCGTTGCGGGTAATAAAGGAAAGTGTCGCCGGGAACGGTACTTTCGCCTTACCGTCATCGGAGCTGAAGACACAATAGGAGCGCCCGCCAATCACCTGCGCGGGTCCGGTCACCTTGATCAGCACTTCGTCGGCAGCTGTTTTACCGCTGGTGGTTACGATATAGCCGAAATCGAGTGCCGACTCGCCGCTGCCAACATATCCCTCCCGCGACGGTGTCTGAGTATATTCATCGGAGATAATACTGATGCTGAAATCACGGGGTTTGATAATCAGCGTGTTGGAGGTAGAAAATTCATACCAGCCAGACTCCGGTGATGTGGTGTTCTGAAAGCGAAAGTTGAATAGATCTTTGGTGTTGATATCGCTGATCCCGAGGTTCACCATCTGCTTAAAGAAGTTGCTCGAGAAGAAAACATAGATCGAGTCTGCGCTCTTCATCTCGTTGAAGGTGTAGTAATAGGCGGTATTGC > NC_000913/305419‑305892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |