| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,653,231 | Δ52,001 bp | IS5‑mediated | yhiS–[dppB] | 43 genes yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, gadF, mdtE, mdtF, gadW, gadY, gadX, gadA, ccp, treF, yhjB, rcdB, yhjD, yhjE, yhjG, pdeH, kdgK, yhjJ, dctA, pdeK, bcsC, bcsZ, bcsB, bcsA, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, [dppB] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3652226–3653234 | 3705231 | 51998–53006 | 4 [3] | [0] 7 | [insH11]–[dppB] | [insH11],yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,gadF,mdtE,mdtF,gadW,gadY,gadX,gadA,ccp,treF,yhjB,rcdB,yhjD,yhjE,yhjG,pdeH,kdgK,yhjJ,dctA,pdeK,bcsC,bcsZ,bcsB,bcsA,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,[dppB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 7 (0.360) | 5/278 | 1.3 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3705232 = | 0 (0.000) | coding (559/1020 nt) | dppB | dipeptide ABC transporter membrane subunit DppB | |||||
TCACCCGCATGCGGGTTAGCCCTTTGGCGCGCGCGGTGCGGATGTAATCCTCGCCCAGCACTTCCAGCATCGAGGAGCGTGTCATACGCACAATGACCGCCAGCGGAATAGTACCCAGCACAATGGCAGGCAAGATCATATGGGCGACGGCATCGATAAAGTTGCCGTCTTCACCCCAGATGGCGGTGTCGATTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGACGGGCGTCAGGTTCCAGTGCACCGAAACCAGCATGATCAGCATCATGCCCCACCAGAAGATAGGCATTGAATAACCTGTCAGCGCCAG > NC_000913/3705040‑3705385 | cgatgacttccaccatgttttgccatggcagaatatgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCAcgcg > 1:181243‑M2/193‑250 (MQ=255) ccatgttttgccatggcagaatctgctccatgcgggacaagaaaagctctgttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGAcgggn < 1:124080‑M2/71‑2 (MQ=255) cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagacgatcactaatgacgcaccctgttctatggctccagatgacaaacatgacctcatatcagggacttgttcgcaccttccTTAGCATaa > 1:250109‑M2/133‑141 (MQ=255) ngcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGACGGGCGTCAGGTTCCAGTGCACCGAAACCAGCATGATCAGCATCATGc > 1:104336‑M2/93‑206 (MQ=255) tgactcatgatgagccctgttctatggcgccagatgacaaacattatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAg < 1:321221‑M2/29‑1 (MQ=255) ctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGACGGGCGTCAGGTTCCAGTGCACCGAAACCAGCATGATCAGCATCATGCCCCACCAGAAGATAGGCATTGAATAACCTGTCAGCGCCAg > 1:24141‑M2/74‑227 (MQ=255) tgatctcatatcagggacttgttcgcaccttccTTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGACGGGCGTCAGGTTCCAGTGCACCGAAACCAGCATGATCAGCATCATGCCCCACCAGAAGATAGGCATTg < 1:75934‑M2/135‑1 (MQ=255) | TCACCCGCATGCGGGTTAGCCCTTTGGCGCGCGCGGTGCGGATGTAATCCTCGCCCAGCACTTCCAGCATCGAGGAGCGTGTCATACGCACAATGACCGCCAGCGGAATAGTACCCAGCACAATGGCAGGCAAGATCATATGGGCGACGGCATCGATAAAGTTGCCGTCTTCACCCCAGATGGCGGTGTCGATTAGCATAAAACCGGTTAACGGATTGGAGTCATCGAGGAACACCATATCGCTCACGCGACCGGAGACGGGCGTCAGGTTCCAGTGCACCGAAACCAGCATGATCAGCATCATGCCCCACCAGAAGATAGGCATTGAATAACCTGTCAGCGCCAG > NC_000913/3705040‑3705385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |