| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,653,231 | Δ52,001 bp | IS5‑mediated | yhiS–[dppB] | 43 genes yhiS, slp, dctR, yhiD, hdeB, hdeA, hdeD, arrS, gadE, gadF, mdtE, mdtF, gadW, gadY, gadX, gadA, ccp, treF, yhjB, rcdB, yhjD, yhjE, yhjG, pdeH, kdgK, yhjJ, dctA, pdeK, bcsC, bcsZ, bcsB, bcsA, yhjR, bcsE, bcsF, bcsG, ldrD, rdlD, yhjV, dppF, dppD, dppC, [dppB] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3652226–3653234 | 3705231 | 51998–53006 | 4 [3] | [0] 7 | [insH11]–[dppB] | [insH11],yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,gadF,mdtE,mdtF,gadW,gadY,gadX,gadA,ccp,treF,yhjB,rcdB,yhjD,yhjE,yhjG,pdeH,kdgK,yhjJ,dctA,pdeK,bcsC,bcsZ,bcsB,bcsA,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,[dppB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 7 (0.360) | 5/278 | 1.3 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 3705232 = | 0 (0.000) | coding (559/1020 nt) | dppB | dipeptide ABC transporter membrane subunit DppB | |||||
CGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGAT > NC_000913/2289891‑2290325 | cGGCCATTACCAGCCTTGGGGTAAAACGGCTCGCTGAATTACACCATGTTTTCCCATGGCAGGATCCGCTCCATGCGGGACAAGCAGATCTCTTTTCTGGTTTGACGGCGCGTCCTGCTGACTTCACTGTCGCCGGAGGTAAGTTGCTGACTCATGATGAACCCTGGTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAg > 1:221764/1‑235 (MQ=11) aCCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGAAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGCTGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATa > 1:77972/1‑218 (MQ=14) tCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAAc < 1:280561/233‑1 (MQ=255) gACGGCGCTTACTGCTGAATTCACTGTCTGCGGAGGTAAGTTGATGACTCATGCTGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTTCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGAAAAAGAGAAACAGAACCAGATTGATGCATTg > 1:480546/1‑189 (MQ=21) gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGNACCCTGGTCNNTGNCTCCANANNNCNNNCANGATCTCATATCAGGGACTTNTTNNCACCTTNCATAACGCTGTAGCCACCAGAACAGa < 2:116885/141‑1 (MQ=17) gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGa > 1:116885/1‑141 (MQ=255) tgatgaCTCATGATGAACCCTGTTCTATGGCCCCAGATGACAAACATGATCTCATATCAAGGACTTGTTCGCACATTACATagt > 1:445128/1‑82 (MQ=255) atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATCTCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGtt > 1:196931/1‑239 (MQ=255) cATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTa < 1:234543/224‑1 (MQ=255) atgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTGCAGCCTATGAAATGAATTGCTGTTAAAAGCATTGTGTACAGAAAATTCCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTGTAAAGAAATGCACAAGTATtgt < 1:369510/251‑1 (MQ=39) tCCAGNTGACANANNTGATCTCATATCAGGGACTNGTTCGCACCTTCCATNACGCNGTAGcnacna > 2:191481/1‑66 (MQ=17) tCCAGATGACAAACATGATCTCATGTCAGTGACGTGTTCTCACCTTCCATAACGCTTTAGCCACCAGAACAGAGATTGCGGAACGACAAAGAGAAACAGAACCAGATTGAt < 1:191481/111‑1 (MQ=37) ccAGATAACAAACATGCTCTCATATCAGCGACTTGTTCGCACCTTCCATAACGCTGTAGCAACAAGAACAGATATTGCGGAACGACAAAGAGAACCAGAACCAGATTGAt > 1:424092/1‑110 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTCGCCACCAGAACCGATATTGCGGAACGACAAAGAGAAACAGCACCCGATTGATGCATTGACCTTTCATCCTATg > 1:376974/1‑123 (MQ=37) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtgat > 1:165857/1‑251 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTNCGCACCTTCCNTAANNCTGTNGNCNCCAGAACAGATATTGCGGAACGACAAAGANAAACAGAACCAGATTGATGCATTNNTCNNNCTNNCTATg < 2:376974/123‑1 (MQ=37) gACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGCAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTCATTGCTGTTa > 1:191761/1‑118 (MQ=255) gTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAg < 1:290250/211‑1 (MQ=255) cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACACAGAGAAACAGAACCAGATTCATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATtgtg > 1:236321/1‑195 (MQ=255) cGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAgttgtt < 1:141261/213‑1 (MQ=255) cACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACa > 1:401998/1‑123 (MQ=255) ccTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTCAAAGCATTGGGTACAGAAAATACCCATa > 1:407393/1‑134 (MQ=255) | CGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGAT > NC_000913/2289891‑2290325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |