Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 332,367 IS2 (–) +5 bp [pdeL] [pdeL]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 332367 =0 (0.000)12 (0.620) 11/278 0.4 100% intergenic (+491/‑4) yahV/pdeL protein YahV/DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 = 1469240 NA (NA)noncoding (1/1331 nt) IS2 repeat region
* ? NC_000913 = 3323710 (0.000)21 (1.100) 18/274 0.1 100% coding (1/1089 nt) pdeL DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL
?NC_000913 = 382590 NA (NA)noncoding (1331/1331 nt) IS2 repeat region

GTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTC  >  NC_000913/1469104‑1469312
                                                                                                                                        |                                                                        
gtgtgATACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCGTCTGTTCGCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACGTATTTAAGTGATCTTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTAGGCTGATTCCGGTTCTAAAATTGTTAATAAAGGTACTTGTAGATTCAATTggcc  <  1:458626/209‑3 (MQ=18)
                                                                                                                                        |                                                                        
GTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACCCCAGAACTTACTTATGCTGATTCCGGTGCGAAAATTGTTAATAAAGGTACTTGTAGATTCAATTGGTC  >  NC_000913/1469104‑1469312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.