| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 332,367 | IS2 (–) +5 bp | [pdeL] | [pdeL] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 332367 = | 0 (0.000) | 12 (0.620) | 11/278 | 0.4 | 100% | intergenic (+491/‑4) | yahV/pdeL | protein YahV/DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 332371 | 0 (0.000) | 21 (1.100) | 18/274 | 0.1 | 100% | coding (1/1089 nt) | pdeL | DNA‑binding transcriptional regulator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
TTGCGTGATTATCTCCTGAGTTTGACTTGTGATTACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTACAACGGTTCATTTGTCATTGCCTGGTAGCGTATCCGAGAAAGAACGACTGCTACTCAAGCTGCTGATGCAGGGAATGTCTGTAACAGAAATATCACAGTACAGAAATCGCAGTGCAAAGACAATTTCACATCAAAAGAAACAGCTCTTTGAGAAACTGGGGATTCAGAGCGATATT > NC_000913/332151‑332589 | gctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacaacaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTCATTAATTCATGTGATTTTCGTGTTTTTCTg > 1:418138‑M1/217‑250 (MQ=255) ttgccgggcaacgagtgagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATGTTCGTGTTTTTCTGCAAGAGTTCgg > 1:468423‑M1/206‑250 (MQ=255) cgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGc > 1:290730‑M1/195‑229 (MQ=255) gATTTCCTTTTTAAGGTA‑TTAGCGTAACTGTTTTTGAGCGAGTATCAGAGGTAAAGATAATGTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATTTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATGCTGAACAGCGAAAAAAGATAAAGGTGTGTTCAtggattttcccctatatttccagacatctgttatcacttaacccagtacaagcccgctgcc < 1:337292‑M1/251‑62 (MQ=255) tACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccan < 1:92335‑M1/211‑24 (MQ=255) ttAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaag > 1:288989‑M1/1‑181 (MQ=255) agcATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatg > 1:468465‑M1/1‑150 (MQ=255) gagGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc < 1:458554‑M1/251‑109 (MQ=255) tAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTGTATGGTTACCCCTTAGGTGTGCTCAGGAATCGACAGGCAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTTTTCAtggagttgcccctatatttccagacatctg < 1:439796‑M1/169‑31 (MQ=255) aTAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatttgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgtta < 1:258305‑M1/251‑118 (MQ=255) tAATCTTCTTGAGAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAAACGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgc < 1:295247‑M1/142‑10 (MQ=255) nnnnnncgnnnnnaagncatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTc > 2:303211‑M1/119‑150 (MQ=255) gTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcc < 1:33868‑M1/251‑133 (MQ=255) tGTTATACGTATGGCATCGCTGATGTTTAGGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGGAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGGTCAtggatttgcccctatatttccagacatctgttatctcttaacccagtacaagcccgctgccgcatatatccccgtggcgagcgataacccagctcactatgcggatgccattctttataatgctcgaacgcctctgcaaggt < 1:485179‑M1/250‑143 (MQ=255) aTCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacgtaacccatttcaatcccgctgccgcagatatgcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgcccgaacgcctctgcaaggttctttgct < 1:354311‑M1/243‑151 (MQ=255) gATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCAGTCATACTGAAAAGCGATCAAACCTAAAGGTGTGTTAAtggatttgtccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataccccagcgcactatgcggatgccattagttataatgctagaacgactctgcaaggctctttgctgccgttcacccgtc > 1:211707‑M1/1‑87 (MQ=255) tACCCCTTATTTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacagctgttatcacttaacccattacaagcccgcggccgcagatattcccgtggcgagcgataacccagctcactatgcggatgccattctttataatgctcgaacgcctctgcaaggttctttgctgccgttatcccgtctggtttgggca < 1:440674‑M1/250‑176 (MQ=255) ccccTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcgcc > 1:254012‑M1/1‑73 (MQ=255) ccTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAACGATACAGGTGTGTTCAtggatttgccactatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagat > 1:382397‑M1/1‑71 (MQ=255) attaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTACAACGGTTCATTTGTCATTGCCTGGTAGCGTATcc > 1:69026‑M1/61‑142 (MQ=255) gtgCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattc > 1:396846‑M1/1‑63 (MQ=255) aGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacn < 1:147005‑M1/251‑195 (MQ=255) ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgccccgatagttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgc < 1:205461‑M1/164‑109 (MQ=255) cgtagttaagtgatattggttggctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCgtgt > 1:274373‑M1/48‑74 (MQ=255) taagtgatattggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTc > 1:178735‑M1/42‑84 (MQ=255) gatattggttgtctggagattcagggggccagtttaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGATTTCGGTACAACGGTTCATTTGTCATTGCCTTGTAGCGTATCCGAGAAAGAACGACTGCTACTCAAGCTGCTGATGCAGGGAATGTCTGTAACAGAAATATCACAGTACAGAAATCGCAGTGCAAAGACAATTTCACATCAAAAGAAACAGCTCTTTGAGAAACTGGGGATTCag > 1:349466‑M1/37‑250 (MQ=255) ggttgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTACAACGGATCATTTGTCATTGCCTGGTAGCGTATCCGCGAAAGAACGACTGCTACTCAAGCTGCTGATGCAGGGAATGTCTGTAACAGAAATATCACAGTACAGAAATCGCAGTGCAAAGACAATTTCACATCAAAAGAAACAGCTCTTTGAGAAACTGGGGATTCAGAGCGat < 1:434626‑M1/220‑1 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGTGTTCAtggatttgcccctatatttccagacatctgttatcacttaacacattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctc > 1:218267‑M1/1‑33 (MQ=255) tgtctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTTCAaga > 2:20591‑M1/28‑66 (MQ=255) ctggagattcagggggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTACAACGGTTCATTTGTCATTGCCTGGTAGCGTATCCGAGAAAGAACGACTGCTACTCAAGCTGCTGATGCAGGGAATGTCTGTAACAGAAATATCACAGTACAGAAATCGCAGTGCAAAGACAATTTCACATCAAAAGAAACAGCTCTTTGAGAAACTGGGGATTCa < 1:247772‑M1/213‑1 (MQ=255) aaaaGATAAAGGTGAGTTCAtggatttgcacatatatttccagacatctgttatcacttaacccattacaag > 1:403460‑M1/1‑20 (MQ=255) ggccagtctaGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGCGTTCGGTATAACGGCTCATTTGTCATTGCCTGGTAGCGTATCCGGGAAAGAAGGAAGGCTACTCAAGCTGCTGa < 1:224375‑M1/113‑1 (MQ=255) | TTGCGTGATTATCTCCTGAGTTTGACTTGTGATTACCTTTTTAAGGTATTTAGCGTAACTGTTTTTGAGCGAGCATCAGAGGTAAAGATAATCTTCTTGATAGTGATGTGGGATGTTATACGTATGGCATCGCTGATGTTTATGGTTACCCCTTATGTGTGCTCAGGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGTACAACGGTTCATTTGTCATTGCCTGGTAGCGTATCCGAGAAAGAACGACTGCTACTCAAGCTGCTGATGCAGGGAATGTCTGTAACAGAAATATCACAGTACAGAAATCGCAGTGCAAAGACAATTTCACATCAAAAGAAACAGCTCTTTGAGAAACTGGGGATTCAGAGCGATATT > NC_000913/332151‑332589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |