| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,302,147 | Δ5 bp | coding (966‑970/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1302147 | 1302151 | 5 | 18 [0] | [0] 18 | oppA | oligopeptide ABC transporter periplasmic binding protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1302146 | 0 (0.000) | 18 (0.940) | 14/274 | 0.2 | 100% | coding (965/1632 nt) | oppA | oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1302152 = | 0 (0.000) | coding (971/1632 nt) | oppA | oligopeptide ABC transporter periplasmic binding protein | |||||
ACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGT > NC_000913/1301897‑1302349 | aCGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTCCCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCTATCGAATTTTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTGCACGTTGATCCATACCTGTGCACTTACTAGTACGAAAGTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGa < 1:484796‑M1/251‑2 (MQ=255) ccGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGTATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGCAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttcatacagtgaaagcgcag > 1:291532‑M1/1‑196 (MQ=255) aaaatCGACATGTCGTAAAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAATAGATCCGGGACGAAGTCCACGTGGATCCATACTTGTGCACTTCTTTTTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcg < 1:446066‑M1/250‑82 (MQ=255) aaaTCGACATGACGTAAAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATCCCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcatggttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgc < 1:350637‑M1/251‑83 (MQ=255) cgtataaCAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATCCCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatat > 1:426990‑M1/4‑157 (MQ=255) gAATTTTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTCCCCGTTGATCCATACCTGTGCACTTAATATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGGGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccagaatggtt < 1:166189‑M1/243‑107 (MQ=255) gCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccagaatggtttggctggagccaggaaaaacgt > 1:179439‑M1/1‑123 (MQ=255) gAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCAATTCACCGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccagaatggtttggctggagccaggaa > 1:235756‑M1/1‑120 (MQ=255) aaaaGAGATCCAGGACGAAGTTCACGTTGATCCATAACTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccaga > 1:428593‑M1/1‑117 (MQ=255) ccGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactcca > 1:285054‑M1/1‑107 (MQ=255) nttcACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGacc > 1:308877‑M1/2‑98 (MQ=255) gTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGacc < 2:308877‑M1/101‑4 (MQ=255) ccATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGAACTGACACTAGGaccgcgctatcattgtt > 1:502706‑M1/1‑86 (MQ=255) gAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccagaatggtttggctggagccaggaaaaacgtaacgaagaagcgaaaaaactgctggctgaagcgggttataccgcagacaaaccgttgaccatcaacctgttgtat > 1:37042‑M1/1‑48 (MQ=255) tgtgcgtgtgcgTACCGCACTGAAACTAGGcccgcgatatcattggtaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcn < 1:45397‑M1/111‑82 (MQ=255) ngtaCCGCACTGAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgatggcgcaaaattgactcagccagaatggtttggctggagccaggaaaaacgtaacgaagaagcgaaaaaactgctggctgaagcgggttataccgcagacaaacc > 1:96342‑M1/2‑20 (MQ=255) gAAACTAGGaccgcgatatcattgttaataaagtgaaagcgcaggg < 1:382948‑M1/46‑38 (MQ=255) aCTAGGaccgcgatctcattgttaataacgtgaaagcgcagggcaacatgcccgcctatggttacactccaccgtatactgctggcgcaaacttgactcagcccgaatggtttggctggagccaggaaacacgtaacgaagaagcgaaaaaactgctg > 1:168516‑M1/1‑6 (MQ=255) | ACGCGAAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAATCGACATGACGAATAACAGCATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATCCATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAACTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCAACATGCCCGCCTATGGTTACACTCCACCGTATACTGATGGCGCAAAATTGACTCAGCCAGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGCTGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGT > NC_000913/1301897‑1302349 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |