| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 14 (1.700) | 11/334 | 0.0 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2319850 = | 0 (0.000) | coding (27/2850 nt) | rcsC | histidine kinase RcsC | |||||
| * | ? | NC_000913 | = 2319854 | 0 (0.000) | 9 (1.100) | 7/334 | 0.1 | 100% | coding (23/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
CGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTG > NC_000913/2319607‑2320096 | cgGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTTACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACt > 1:169815‑M1/1‑248 (MQ=255) nacggaatagcagagagcttcgtgaaaccgataaagcgtcactacatcagtaccatgcccaaaccagccgggttaccggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGCAAAGAAGCAAGGt > 1:16992‑M2/231‑250 (MQ=255) gCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctcc > 1:63532‑M1/1‑226 (MQ=255) gttaacggcagcaaagaaccgtgcagagtcgttcgagcattataacgaatggcatcctcatagtgcgctgggttagcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAATATATTTCAAAGGGGCGAAGCTCCGTCTCAGGTGACCGATGGAGTGTTGTTAAGGTAGCGGTAAAAGCGTGTTAc < 1:64087‑M2/92‑1 (MQ=255) gcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTGAAGGTTGCGGTAAAAGCGTGTTACCGCAATg < 1:45137‑M2/99‑1 (MQ=255) ncaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTtc > 1:42635‑M2/150‑251 (MQ=255) ccttgcagaggcgttcgagcattatcacgaatggcatccgcatagtgcgctgggttatcgctcgacacgggaatatctgcgggagcaggcttgtaatggggtaagtgataaaagatgtctgcaactattggggcaaaaccaTGTACGAAAAGAAGCAAGGAATTTCAACGGGGCGAAGCTCCCCCTCAGGt > 1:80011‑M2/142‑191 (MQ=255) tgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggcatatctgcggcagcgggcttgtaatgggttaagtgataaacgatgtctggaaatataggggcaaatccaTGTACGCAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGGTAAGGTAGCGGTAAAAGCGTGTTACCGCCATGTTCTCTCTTCTCTg > 1:167004‑M2/139‑251 (MQ=255) natTAAATTCCTGACGAATTTCCGCTTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgatt > 1:18044‑M1/2‑138 (MQ=255) gttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTa < 1:5345‑M2/80‑1 (MQ=255) cGAATTTCCGATTATCGCGGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGAAATAAACAGCAAGAGAACTATCGCCACTGCTCTGAACATGTAGCACGAGGCTTTAAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacgg > 1:124962‑M1/1‑124 (MQ=255) gcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc > 1:90675‑M2/103‑143 (MQ=255) gtgcgctgngnnntnnctcgccacgggaatatctgcggcagcgggcttgtaatgggttaantgataacagatgtctnganatatngggncaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAg > 2:120461‑M2/98‑126 (MQ=255) natTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacaca > 1:39682‑M1/2‑96 (MQ=255) tAAAAACCGGCTGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCAAGGCTTTCAGGATTGTACtacactggccccctgaatctccagacaaccaatatcacttaaataag > 1:141567‑M1/1‑85 (MQ=255) ggATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacac < 1:61178‑M1/214‑138 (MQ=255) tctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTg < 1:7248‑M2/184‑1 (MQ=255) tgcggcagcgggctggtaaggggttaagtgataacagatgtctggaaatatagggtcaaatccaTGTACGAAAAGAAGCAAGGTAGTGCAAAGGGGCGGAGCCCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCgtg < 1:158950‑M2/88‑1 (MQ=255) gcggcagcgggcttgtaatgggttaagtgataacagatgtcgggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAGGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCGTCTCTGGAATATGATACACCTCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTg < 1:160540‑M2/184‑1 (MQ=255) cAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggc < 1:46147‑M1/75‑10 (MQ=255) ggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTgg < 1:1936‑M2/114‑1 (MQ=255) ggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTAc > 1:133325‑M2/22‑251 (MQ=255) ggTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgctagtcttaatactagattttagactagtcattggagaacagatgattgatgtcttagggccggcgaaacgcagacggcgtaccacacaggtaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcgta > 1:171714‑M1/1‑8 (MQ=255) | CGGGGAAAGCACACCGTTTTCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTG > NC_000913/2319607‑2320096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |