Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,319,850 IS2 (+) +5 bp coding (23‑27/2850 nt) rcsC ← histidine kinase RcsC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2068941 =NA (NA)14 (1.700) 11/334 0.0 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 2319850 = 0 (0.000)coding (27/2850 nt) rcsC histidine kinase RcsC
* ? NC_000913 = 23198540 (0.000)9 (1.100) 7/334 0.1 100% coding (23/2850 nt) rcsC histidine kinase RcsC
?NC_000913 = 2997691 NA (NA)noncoding (1/1331 nt) IS2 repeat region

GTTTCTACTGCAACCGCAACTTCTTCAGAAACAAAAATCAGCAACGAAGAGACGCTCGTCGTGACCACGAATCGTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCAC  >  NC_000913/2068701‑2069149
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                
gTTTCTACAGCAACCGCAACTTCGTCAGAAACAAAAATCAGCAACGAAGAGACGCTCGTCGTGACCACGAATAGTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTATAGATAACAGACAACTCCTTGGCAGGGCGTTAACAAATCCGCATTCGTGGCTGGAttt                                                                                                                                                                                                            <  1:49430/247‑1 (MQ=255)
               ncAACTTCTTCAGAAACAAAAATCAGCAACGAAGAGACGCTCGTCGTGACCACGAATCGTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGAc                                                                                                                                                                                          >  1:29418/2‑250 (MQ=255)
                                                                        cGTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCCCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTGCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGgcgagc                                                                                                                                 <  1:88704/250‑1 (MQ=255)
                                                                         gTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGCCCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATACTTTGCAGGACATCCCCGGAGTAGAGATAACCGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCACAGATATTCCCGTGacgagcg                                                                                                                                >  1:2491/1‑250 (MQ=255)
                                                                                                            ataCAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTg                                                                                                                                                        <  1:138268/191‑1 (MQ=255)
                                                                                                                          ccAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGAACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCct                                                                              >  1:137578/1‑251 (MQ=255)
                                                                                                                                                accaATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGCTAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGcc                                                                                                                                                             >  1:89936/1‑150 (MQ=255)
                                                                                                                                                                                   ccccTGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTAGATTTCCAGACATCTGTTATCACTTAACCCATTACAAGc                                                                                                                                                              <  1:68872/114‑1 (MQ=255)
                                                                                                                                                                                                      gACAACTCCTTGGCAGGCCGTAACCAAATCAACATTCGAGGCTGGATTTGCCCATATATTTCCAGCCATCTGTCATCCCTTAACCCATTAAAAGACCGCTGCCGCAGATATTCCCGTGACGAGCGATGACCCAGCGCACTATGCGGATGGCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTATTTGCTGCAGTTAACCCGTCTGGTTTGGGCATGATACTGATGTCGTCACGCTTTATCGTTTTCAc  >  1:145180/1‑251 (MQ=14)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                
GTTTCTACTGCAACCGCAACTTCTTCAGAAACAAAAATCAGCAACGAAGAGACGCTCGTCGTGACCACGAATCGTTCGGCAAGCAACCTTTGGGAAAGCCCGGCGACTATACAGGTTATTGACCAACAAACATTGCAGAACTCCACCAATGCCTCCATAGCCGATAATTTGCAGGACATCCCCGGAGTAGAGATAACAGACAACTCCTTGGCAGGCCGTAAACAAATCCGCATTCGTGGCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCAC  >  NC_000913/2068701‑2069149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.