Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 57,276 IS2 (+) +5 bp intergenic (‑167/‑84) lptD ← / → djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 57276 =0 (0.000)18 (1.380) 14/290 0.0 100% intergenic (‑167/‑88) lptD/djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
?NC_000913 = 382590 NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? NC_000913 = 572800 (0.000)11 (0.840) 10/290 0.2 100% intergenic (‑171/‑84) lptD/djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
?NC_000913 381260 = NA (NA)noncoding (1/1331 nt) IS2 repeat region

GCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG  >  NC_000913/381121‑381371
                                                                                                                                           |                                                                                                               
tcAACTACCGCGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTTTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAATCTTAATACTAGTTTTTAGACTCGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCg  >  1:235290/2‑251 (MQ=255)
                                 ccAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCAAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTg                                                                 >  1:227077/1‑155 (MQ=255)
                                 ccAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCANTGCNGATTNTTNTGCCAGGACGAATAANCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATNNCNNNTNAATAAGTg                                                                 <  2:227077/155‑1 (MQ=255)
                                       gTTGCTTCCGCTTCAATCACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCAAGGACGAATAAACGCATAATTACTAGACTGGACCACTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTCGTTTTTAGACTAGTCATTGgag                            >  1:216989/1‑186 (MQ=37)
                                                                                                                                           |                                                                                                               
GCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCAATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCG  >  NC_000913/381121‑381371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.