Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 57,276 IS2 (+) +5 bp intergenic (‑167/‑84) lptD ← / → djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 57276 =0 (0.000)18 (1.380) 14/290 0.0 100% intergenic (‑167/‑88) lptD/djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
?NC_000913 = 382590 NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? NC_000913 = 572800 (0.000)11 (0.840) 10/290 0.2 100% intergenic (‑171/‑84) lptD/djlA lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA
?NC_000913 381260 = NA (NA)noncoding (1/1331 nt) IS2 repeat region

TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTC  >  NC_000913/382474‑382801
                                                                                                                    |                                                                                                                                                                                                                   
taACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGc                                                                                                                                                                                                       <  1:12175/131‑1 (MQ=40)
   cGAATGGCGTCCGCATAGTGCGCTGGGTGATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAAGGGGTTAAGTGATAACAGATGTCTGGAAATAGAGGGGGAAATCTAATTACCTAGCAGTCAGTTGGCGCGAATCACTACCGGACCCTGAATAACGGCTCCATGACAAATACGGGTATTcg                                                                                                                                           <  1:130152/188‑1 (MQ=18)
          cATCCGCATAGGGCGCTTGGTTATCGCTCGCCACGTGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAATGGATAACAGATGTCTTGAAATATAGGGGCAAATCCAATTACCTATCAGTCAGTTTg                                                                                                                                                                                                 <  1:214592/127‑1 (MQ=14)
                                                                          ggTTAAGTTATAACAGATGGCTGGAAATATAGGGGCAAATCCAATGATCGATCAGGCAGTTTGCGCCAATCTCTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATGAGTTCCTGGTCTGCAATCTGAATAGTTGTCTCGTTAACATTAAGCTTCATATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTGGACGc     <  1:241517/251‑1 (MQ=255)
                                                                                gTGATAACAGAGGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCttn  <  1:29488/248‑2 (MQ=255)
                                                                                                                    |                                                                                                                                                                                                                   
TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAATTACCTATCAGGCAGTTTGCGCCAATCACTACCGGACCCTGAATAACGGCACCATGACAAATACGGGTATTCGCGCCGATAACAACTTCACCTGCAGTTTCATCAATAATTACCTGGTCTGCAATCTGAATATTTTTCTCTTTAACATTAAGCTTCAGATAGTTTTTCAGTTCCTGTGACAGAAGGTTGGGAATAAGCGGTTGACGCTTC  >  NC_000913/382474‑382801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.