| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4135180 = | 0 (0.000) | 11 (1.100) | 9/322 | 0.1 | 100% | coding (1346/2181 nt) | katG | catalase/hydroperoxidase HPI |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4135184 | 0 (0.000) | 16 (1.600) | 13/322 | 0.0 | 100% | coding (1350/2181 nt) | katG | catalase/hydroperoxidase HPI |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAA > NC_000913/4499273‑4499729 | ccGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGat > 1:206034/1‑251 (MQ=34) gagagCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCATGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATAc < 1:126054/251‑1 (MQ=255) ggaTCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGGGCATTATAACGACTGGCATACGCATAGTCCGATGGGTTATCGCTCGCCCCGGGAATATCTGCGGCAGCGGGCTTGCAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCt > 1:210261/3‑251 (MQ=18) ttCGAGCATTATAACGAATGGCATCCNCATAGTNNGCNGGGTTATCGCTCGCCACGGNAANNNCNNNGNAAGCGNGCNNCTCATGGGGNAAGTG‑ATAACAGATGTCTGGACATATAGGGGCAAATCCACCTTGTGCTGATATNTATACGGATNNTTTATACAGAATACTTTTCAGNACANNCNNCNGTangan > 2:47580/1‑189 (MQ=18) cGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGcc > 1:156391/1‑199 (MQ=255) cGAGCATTATAACGAATGGCANCCGCATAGTGCGCTGGGTTATCGCTCGCCACNGNAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCNGGAAATATAGNGGCNNATCCNCNTNGTGCTGATATTAATACGGATATTTTATACNGAATACTTTTCAGTACAAGCGACNNTANNNCANNCTGcc < 2:156391/199‑1 (MQ=18) gCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCACGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGGATTACAGTCTGCCATATATGATTACCTGTGATCAGTAAGAATAAGTGGCTGAGGTTTCAAACTGTCTg < 1:141989/251‑1 (MQ=255) tataACGAATGGTATCCGCATAGTGCGCTGGTTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCg < 1:173558/250‑1 (MQ=255) cATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCctctc < 1:47580/251‑1 (MQ=255) cTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGACTTGTAATGGGTTAAGTGCAAAACA‑ATGTCTGGAAATATAAGCGCAAATCCACCTTATGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATAAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTcttcggatcggacaagcacac > 1:36141/1‑231 (MQ=37) ngTTATAGCTCGCCCCGGGAATATCTGCGGCAGCGGGCTTGAAATGGGTTAAGGG‑ATAAGAGATGTCTGGAAATATAAAGGCACATCCACCTTGTGCTGATATGACTACGGATATTTTCTACAGAATACTTTTCAGTAAAAGCGACTGTATTACAGTCTGCCCTATATGAATACCTGTGATCAGGAAGAATAAGTGGCTGAGGGTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAAc > 1:38083/2‑251 (MQ=255) cTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACACGAGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTAAAACTGTc > 1:103258/1‑149 (MQ=255) cTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGGATATTCCTCTATCCCTTAACAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTAAATTTTCAGTACaaa > 1:15858/1‑241 (MQ=255) tGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGtn < 1:38840/148‑2 (MQ=255) | CCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTG‑ATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAA > NC_000913/4499273‑4499729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |