| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 18 (1.800) | 14/322 | 0.0 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2319850 = | 0 (0.000) | coding (27/2850 nt) | rcsC | histidine kinase RcsC | |||||
| * | ? | NC_000913 | = 2319854 | 0 (0.000) | 13 (1.300) | 11/322 | 0.0 | 100% | coding (23/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
GCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGG > NC_000913/2319629‑2320100 | gCCGAGAAGCGATTTTCTGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACGCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGGAAAAAACGGAGGAAAAAGCAATCAACAGCCAGAGCACGAACGCCAATGCTCTGAAGATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccag < 1:199262‑M1/250‑25 (MQ=255) natTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatat > 1:132392‑M1/2‑216 (MQ=255) gATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaa > 1:186854‑M1/1‑216 (MQ=255) cgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTcc > 1:56656‑M2/211‑251 (MQ=255) gcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATGTCAAAGGGGCGAAGCGCCGCCTCAGGTGCCCGATGGAGTGTGGTTAAGgtacc < 1:211064‑M2/76‑3 (MQ=255) cccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattatatcgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaagatcttcggcagcgggcttgtaatgggttaagtgataacagaggtctgtaaagataggggcaaagcgaAGTACTAAAATAAGCAGTATATTTCTAAGGGGCGAAGCCCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCgg < 1:138119‑M2/78‑1 (MQ=255) gTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGCTGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGCACATGTCGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtc > 1:214846‑M1/1‑171 (MQ=255) gcagcaaagaaccttgcagaggcgttcgagcattataacgaatggtatccgcatagtgcgctgggttagcgctcgcctctggaatatctgctgcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAATGTATTTTAAAGGGGCGAAGCTCTGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAatn < 1:43499‑M2/99‑2 (MQ=255) cagcaaagaaccttgcagaggcgttcgagcattatcacgaatagcatccgcatattgcgctgggctatcgctcgccacgggactatctgcggcagaggacttgaaatgggttaagtgataacagatgtctggaactataggggcaaatccaTGTACGGAAAGAAGCAAGGTATTTCCAAGGGGCGAAGCTCCGCCACAGGTGACCGATCGAGTGTGGTTAAGGTAGCGGTAACAGAGTGTTACCGCAATGt > 1:34122‑M2/152‑251 (MQ=255) aagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaagataggggcaaatccaTGTACGAAAAGAAGCAAGGGATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGTCCGATGGAGTGTTGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTtctct < 1:121117‑M2/105‑1 (MQ=255) gttcgagcattataacgaatggcatccgcatcgtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGAt > 1:71621‑M2/130‑251 (MQ=255) ngagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATac > 1:40181‑M2/127‑250 (MQ=255) agcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAaagaa > 1:121383‑M2/125‑137 (MQ=255) ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCgtg < 1:205315‑M2/88‑1 (MQ=255) ccacgtgaatatctgcggcagcgtgcttgtaatgggttaagtgataacagatgtgtgtaaatataggggcaaatccaTGTACGAAAAGAATCAAGGTATTTCAAAGGGGCGAAGCTCCTCCTCAGGTTACAGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTAc < 1:164273‑M2/92‑1 (MQ=255) ccacgnnaannnctnnggcagcgggcttgtaatgggttangtgataacagatgtctggaaatataggagnananccaTNNACGNAAGGAAGCAANGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGAGACCGATGGAGTGTGGNTNAGGTAGCGGTAAACGCGTGTTAc > 2:164273‑M2/78‑169 (MQ=255) aaaCGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagg < 1:170492‑M1/189‑109 (MQ=255) nnaannnnnAATNAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttag < 2:132392‑M1/144‑73 (MQ=255) gAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTCGCGAGAGGCTCTCAGAGTTGTACtcgcctgtccccctgaatctccagacaaccactatcacttacataagtgatagtcttaatactagtttttagactagccattggagaaaagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaacgatcgcaattgttcagcagagctttgaaccgggg > 1:208375‑M1/1‑73 (MQ=255) naatCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacgg > 1:127663‑M1/2‑66 (MQ=255) ggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatacaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCg > 1:159417‑M2/62‑103 (MQ=255) gcttgtaatgggttaagtgataacagatgtctggcaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGANNCTCCGCNNc > 2:4889‑M2/54‑99 (MQ=255) gcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCg > 1:203279‑M2/54‑139 (MQ=255) cttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATg < 1:45008‑M2/99‑1 (MQ=255) agagCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttg > 1:12720‑M1/1‑54 (MQ=255) aatgggttaagggatagaagatgtctggaaatatagggggaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGTTTAAGGTGGCGGTAAAAGCGTGTAACCGCAAGTTTTTCTCGTTTCTGGAATATGATACACCGCCGAGAAATCATCTCCTTAACCTCTGATAATCGTCATATACCGGACTAGACTAGTGGATTTCAGCATGCATTatat < 1:91095‑M2/204‑1 (MQ=255) agatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCAcg < 1:139101‑M2/222‑1 (MQ=255) gAACATGTAGCTCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcgtaatactagtttttagactaggcattggagaacagatgattgatgtcgtagggccggagaatcccagacggcgtaccacacaggaaaagatcgcaattgtgcagcagagctttcaaccgggtaggacggtctccctcgttgcccggcaacatggtgtagcagc < 1:188278‑M1/251‑220 (MQ=255) gTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacgtcgtaccacacaggaaaagatcgcaattgttcagcagag < 1:161223‑M1/191‑166 (MQ=255) ggCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcggaccacacaggaaaagatcgcaattattcagcagagctttgaaccggggatgacggtctccctcgttg > 1:17168‑M1/1‑17 (MQ=255) cAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcg > 1:149875‑M1/1‑11 (MQ=255) gTACGAAAAGAAGCAAGTTATTTCAAAGGGGCGAAGCTCCGCCTCGGGTGACCGATGGAGTGTGGTTAAGGTGGCGTTAAAAGCTGGTTACCGCAATGTTCTCCCTTCCCTGGAATAGGATACACCGCCGAGAAATCATTACCTTAAGCTCTGATAATCGTCATATACCGGACAAGTCTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATgg < 1:203963/250‑1 (MQ=255) | GCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGG > NC_000913/2319629‑2320100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |