New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3305910	2 (0.140)	14 (0.990)	12/308	0.1	80.0%	intergenic (‑93/+61)	mtr/deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
	?	NC_000913	3306184 =	5 (0.350)					coding (1677/1890 nt)	deaD	ATP‑dependent RNA helicase DeaD

ATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACGTTCGCCGCTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCACCGAAACCACGACCACCGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTCGTTAGCAATCGCACCAACGATATGACGAACTTCAACACCATCATCGCGGCCCACTTCAATGCGGTAC  >  NC_000913/3305947‑3306397                                                                                                                                                                                                                                              |                                                                                                                                                                                                                      cggcgccgccattgaccagaaaaaccacgccccggacagtaccactggcagagaaaacatcccggcgccaagaatggtgccgccgataatcaccacgccaccaagcagcgacggggacgttggggtggggggtagtgttgccatgagggcttctccccactgaaaaatagtgcgacggcgtggttatgcagttcactctaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTc                                                                                                                                                                                                           <  1:303571‑M2/13‑1 (MQ=255)     gccgccattgaccagaaaaaccacgccccggacatgaccactggcagagaaaacatccctgcgccactaatggtgccgccgataatcaccacgccgcccagcagcgacggtgacgtttgggtggtggttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagcaccgTAACTGCATGTTCATCgg                                                                                                                                                                                                      >  1:258634‑M2/234‑251 (MQ=255)                    aaaaaccacgccccggacatgaccactggcagagaaaacatccctgcgccaataatggtgccgccgataatcaccacgccgccaagcagcgacggtgacgtttgggtggtggttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactggaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCg                                                                                                                                                                                       <  1:111961‑M2/33‑1 (MQ=255)                                                     gaaaacatccctgcgccaataatggtgccgccgataatcaccacgccgccaagcagcgacggtgacgtttgggtggtggttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgGAACGGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCcgn                                                                                                                                                      <  1:27490‑M2/66‑2 (MQ=255)                                                                                  gccgataatcaccacgccgccaagcagcgacggtgacgtttgggtggtggttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGAGGGTGGAGt                                                                                                                         <  1:11042‑M2/95‑1 (MQ=255)                                                                                                  ccgccaagcagcgacggtgacgtttgggtggtggttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGATAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGc                                                                                                                                                     <  1:101802‑M2/67‑1 (MQ=255)                                                                                                  ccgcTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGTTGAAGATACGACTGCTTTCTCGACGTTCGCCACCGACCCAAAGACCCCTGCCTTGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTACCTGCCTGTTCATCGGCTTGTTGGGAATGCCAGTGAGCGTAAAGTGTTGCAGGACTTCACCCGGCATACCTTTCGGCAGCTCGAttgaggttggccatgcacacgactg                                                                                                         >  1:299160/1‑227 (MQ=255)                                                                                                    ncTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCACCGAAACCACGACCACCGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATa                                                                                                                                                  >  1:57751/2‑208 (MQ=255)                                                                                                    gcTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCACCGAAACCACGACCACCGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTg                                                                                                        >  1:297922/1‑250 (MQ=255)                                                                                                                                   gttagtgttgccatgagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAAc                                                                                                              <  1:164094‑M2/106‑1 (MQ=255)                                                                                                                                       gtgttnncannnggnnttctctccagtgaaaaatagtgcnactgcgttgttatgcattgcactgtaccantncncgagnncaanagacagaaaanaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCNTNAAGTGTTGCCGCACTTCACCCGGCATACCTTNCGGCAGTTCGATGGGGGGGTgaganacaannagncnnnnnnnnnn                                                                                                >  2:238353‑M2/104‑211 (MQ=255)                                                                                                                                                 gagggcttctctccagtgaaaaatagtgcgactgcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCTCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTCGTTAGCAATc                                                           <  1:238353‑M2/157‑1 (MQ=255)                                                                                                                                                                  gaaaaatagtgcgactgcgttgttatgcattgcactgttccagtacactagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCGCTTCACCCTGCATACCTTTCGGCAGTTCGATGGTTGAGTGAGTAGCTAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTCGTTAGCAATCGCACCAACGATCTGACg                                          <  1:243278‑M2/174‑1 (MQ=255)                                                                                                                                                                  gaaaaagagtgcgacggcgttgttatgcattgcactgtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTgttn                                                                                                                                                                     <  1:58252‑M2/51‑2 (MQ=255)                                                                                                                                                                        gacgTTCGCCACCGAAACCACGACCACCGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGCGAATGCGAGTGCGCGTAAAGTGTTGCAGCCCTTCACCCGGc                                                                                                                                                     >  1:278526/1‑137 (MQ=255)                                                                                                                                                                                                  ccGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGcc                                                                        >  1:91783/1‑188 (MQ=255)                                                                                                                                                                                                      gtaccagtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTCGTTAGCAATCGCACCAACGATATGACGAACTTCAACACCATCATCGCGGCCCACTTCAATGCgg     <  1:108073‑M2/211‑1 (MQ=255)                                                                                                                                                                                                            gtacacgagtacaaaagacagaaaaaaagccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTCAAGTGTTGCAGCACTTCACCCGGCCTACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTAGTTAGCAATCGCACCAACGCTATGACGAACTTCACCACACTCACAGCGGCCCACTTCAATGCGGTAc  >  1:220010‑M2/35‑248 (MQ=255)                                                                                                                                                                                                                                       agccccgTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGGGTTGCAGCACTTCTCCCGGCATAcc                                                                                                                                                >  1:179044‑M2/8‑79 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                      ATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACGTTCGCCGCTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCACCGAAACCACGACCACCGCCACGACGCTCACCGCCAGTATGCGGCTGTGCATCGCCCAGTAACTGCATGTTCATCGGCTTGTTGAGAATGCGAGTGCGCGTAAAGTGTTGCAGCACTTCACCCGGCATACCTTTCGGCAGTTCGATGGTGGAGTGAGAAGCAAACAGCTTGATGTTACCAATGTAACGGCTGCTGATGTCGCCTTCGTTAGCAATCGCACCAACGATATGACGAACTTCAACACCATCATCGCGGCCCACTTCAATGCGGTAC  >  NC_000913/3305947‑3306397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.