New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3305910	2 (0.140)	14 (0.990)	12/308	0.1	80.0%	intergenic (‑93/+61)	mtr/deaD	tryptophan:H(+) symporter Mtr/ATP‑dependent RNA helicase DeaD
	?	NC_000913	3306184 =	5 (0.350)					coding (1677/1890 nt)	deaD	ATP‑dependent RNA helicase DeaD

CAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACGTTCGCCGCTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCA  >  NC_000913/3305674‑3306124                                                                                                                                                                                                                                             |                                                                                                                                                                                                                       cggcgccgCCATTGACCAGAAAAACCACGCCCCGGACAGTACCACTGGCAGAGAAAACATCCCGGCGCCAAGAATGGTGCCGCCGATAATCACCACGCCACCAAGCAGCGACGGGGACGTTGGGGTGGGGGGTAGTGTTGCCATGAGGGCTTCTCCCCACTGAAAAATAGTGCGACGGCGTGGTTATGCAGTTCACTCTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttc                                                                                                                                                                                                           <  1:303571‑M1/248‑14 (MQ=255)     gccgccATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCACTAATGGTGCCGCCGATAATCACCACGCCGCCCAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCACCGtaactgcatgttcatcgg                                                                                                                                                                                                      >  1:258634‑M1/1‑233 (MQ=255)                    aaaaaCCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGGACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcg                                                                                                                                                                                       <  1:111961‑M1/251‑34 (MQ=255)                                                     gaAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGgaacggcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttgcagcacttcacccgn                                                                                                                                                      <  1:27490‑M1/251‑67 (MQ=255)                                                                                  gccgATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttgcagcacttcacccggcatacctttcggcagttcgagggtggagt                                                                                                                         <  1:11042‑M1/251‑96 (MQ=255)                                                                                                  ccgccAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgataatgcgagtgcgcgtaaagtgttgcagcacttcacccggc                                                                                                                                                     <  1:101802‑M1/207‑68 (MQ=255)                                                                                                                                ntggtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTATACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAAcgacgacga                                                                                                                                >  1:79535/2‑198 (MQ=255)                                                                                                                                   gtTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttgcagcacttcacccggcatacctttcggcagttcgatggtggagtgagaagcaaac                                                                                                              <  1:164094‑M1/213‑107 (MQ=255)                                                                                                                                       gtgtTNNCANNNGGNNTTCTCTCCAGTGAAAAATAGTGCNACTGCGTTGTTATGCATTGCACTGTACCANTNCNCGAGNNCAANAGACAGAAAANAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcntnaagtgttgccgcacttcacccggcataccttncggcagttcgatgggggggtgaganacaannagncnnnnnnnnnn                                                                                                >  2:238353‑M1/1‑103 (MQ=255)                                                                                                                                                 gAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgctcgtaaagtgttgcagcacttcacccggcatacctttcggcagttcgatggtggagtgagaagcaaacagcttgatgttaccaatgtaacggctgctgatgtcgccttcgttagcaatc                                                           <  1:238353‑M1/250‑158 (MQ=255)                                                                                                                                                                  gAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTTCCAGTACACTAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttgcagcgcttcaccctgcatacctttcggcagttcgatggttgagtgagtagctaacagcttgatgttaccaatgtaacggctgctgatgtcgccttcgttagcaatcgcaccaacgatctgacg                                          <  1:243278‑M1/250‑175 (MQ=255)                                                                                                                                                                  gAAAAAGAGTGCGACGGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttn                                                                                                                                                                     <  1:58252‑M1/127‑52 (MQ=255)                                                                                                                                                                              gACTGCGTTGTTATGCATTGCACTATACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACGTTCGCCGCTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGa                               >  1:257043/1‑249 (MQ=255)                                                                                                                                                                                                      gTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagtgttgcagcacttcacccggcatacctttcggcagttcgatggtggagtgagaagcaaacagcttgatgttaccaatgtaacggctgctgatgtcgccttcgttagcaatcgcaccaacgatatgacgaacttcaacaccatcatcgcggcccacttcaatgcgg     <  1:108073‑M1/251‑212 (MQ=255)                                                                                                                                                                                                            gTACACGAGTACAAAAGACAGAAAAAAAGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtcaagtgttgcagcacttcacccggcctacctttcggcagttcgatggtggagtgagaagcaaacagcttgatgttaccaatgtaacggctgctgatgtcgccttagttagcaatcgcaccaacgctatgacgaacttcaccacactcacagcggcccacttcaatgcggtac  >  1:220010‑M1/1‑34 (MQ=255)                                                                                                                                                                                                                                       aGCCCCGtaactgcatgttcatcggcttgttgagaatgcgagtgcgcgtaaagggttgcagcacttctcccggcatacc                                                                                                                                                >  1:179044‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                                                       CAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGACGGTGACGTTTGGGTGGTGGTTAGTGTTGCCATGAGGGCTTCTCTCCAGTGAAAAATAGTGCGACTGCGTTGTTATGCATTGCACTGTACCAGTACACGAGTACAAAAGACAGAAAAAAAGCCCCGATGGTAAAAATCGGGGCTGTATATATTATTTTACAGATTGTGTTCGCTGTTCAGCGATGATTACGCATCACCACCGAAACGACGACGACCGGTAGAATCATCACGACGCGGAGCGCGGCCTTCACGACGTTCGCCGCTAAAACGACGACCATCACCACGGCCACCTTCACGGCGTTCACCGCTGAAGTTACGACCGCCTTCACGACGTTCGCCA  >  NC_000913/3305674‑3306124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.