New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	14 (0.990)	10/308	0.2	93.3%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	4536236 =	1 (0.070)					intergenic (‑2183/‑361)	topAI/ythB	toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB

TGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAG  >  NC_000913/4536033‑4536441                                                                                                                                                                                                            |                                                                                                                                                                                                              ctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaatgggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGc                                                                                                                                                                  <  1:322553‑M2/46‑1 (MQ=255)      tgaGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGTCTGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTaaggaaggtgctaacaagtc                                                                                                                                                                                          <  1:272410/220‑19 (MQ=255)                        ccacatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGcc                                                                                                                                         >  1:3827‑M2/181‑251 (MQ=255)                        ccaaatgatacttcagtgggagagagctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaatatgcttattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaaggactgagtcacccgagaagaatttccccgcttatccgcaccttccCTAATTTCTTGGAACATCAGTAAGCATATCAGCACCGTCTATTTGCCAGAATCCGTCGACTTATAATCGcc                                                                                                                                         <  1:207144‑M2/71‑1 (MQ=255)                                                                gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaactgactgagtaagccgagcagaatttccccgcttattcgcacattccCTAATTTCTTTGAACATAATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGccc                                                                                                 >  1:211144‑M2/141‑251 (MQ=255)                                                                         ncttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTc                                                                                        >  1:84671‑M2/132‑251 (MQ=255)                                                                                                              caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCnattnnnnngannnnnnnnnn                                                                                                                                                    >  2:199991‑M2/95‑144 (MQ=255)                                                                                                              caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAAcgn                                                                                                                                  <  1:199991‑M2/78‑2 (MQ=255)                                                                                                                           ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAgg                                       >  1:171525‑M2/82‑250 (MQ=255)                                                                                                                              gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTa                                                                                                                                                                                          >  1:263612‑M2/79‑100 (MQ=255)                                                                                                                                aaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGnncatcatnn                                                                                                                                                                                          >  2:17452‑M2/77‑96 (MQ=255)                                                                                                                                aaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATc                                                                                                                                                           <  1:17452‑M2/53‑1 (MQ=255)                                                                                                                                         ctcaaacatgaagaaatgacatgactgagtccgccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTACACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTAtt                         >  1:270990‑M2/68‑250 (MQ=255)                                                                                                                                                    agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCAAAAACGTTCCAGTAAACTGTTTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCcggn             <  1:83380‑M2/195‑2 (MQ=255)                                                                                                                                                               gactgagccagccgagaagaatttccccgcttattcgcaccttccCTAATTTCTTAAAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATGTCAGGACGGTGGGGCGAACGCTGTGGCCGAAAACGTGCCATTAATCTGTGTGGATTGTCGGTGATGTCCGAGCGATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAg  <  1:51263‑M2/206‑1 (MQ=255)                                                                                                                                                                                                            |                                                                                                                                                                                                              TGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAAGCATATCATCATCGTCTATTTGCCAGAATCCGTCGACTTATAATCGCCAGAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGTCTATTAAGGCATCCGGCTAATCTGTAAG  >  NC_000913/4536033‑4536441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.