New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	14 (0.990)	10/308	0.2	93.3%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	4536236 =	1 (0.070)					intergenic (‑2183/‑361)	topAI/ythB	toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB

GAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACC  >  NC_000913/2288701‑2289162                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                     gagttgtCTGAGGCGCAATTAATTTCAATGTTCTGATACCCTCCGTTAATTTCAGTATTATTCCTTACACCAAATTCTTTTATATGCTGTTCTACGCCAGGATTGATTGTCGTATTATTGGAGGTCACATAAACCAGCTGGATATCTTTTTCCATGACAACACCATCAACGGTCTCACCAGACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGTGAAATtcttctag                                                                                                                                                                                                                      <  1:71600/245‑3 (MQ=255) gAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCg                                                                                                                                                                                                                      <  1:71602/251‑1 (MQ=255)                          cAATGTACTGATACCCTCCGTTAATTTCAGGATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGGCCCATAAACCAGCTGGATATCTTGTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagg                                                                                                                                                                                                                                                     <  1:190786/195‑1 (MQ=255)                              gTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTAAATGCTGTTCTCCGCCAGGGTTGATTTTCGTATTATTGGCGGGCCCCAAAACCCCTTGGATATCTTTTTTCCCGACAAACCCCTCAACTGTCTCCCCCTACTCCACCGTTGTTGCCTCAGCTGTGGGTGAATATAAAGAAGGCGCCAATAAACGGGGGAAATCTTTTCGGCTGGCTCAGTC‑CTTTTATTTCTTCATGt                                                                                                                                                                                        >  1:160888/1‑251 (MQ=255)                                                                      ccAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGGTGGATATCCTTTTTCAGGACAACTCCATCAACTGTCTCACAATACTCAACAGTTGCTGCCAATGGTATGGGGGGATATAAGGAAGGGGCGAATAAGAGGGGAACTTCTTCTCGGCTGACTCAGgc‑atttcat                                                                                                                                                                                                  >  1:154925/1‑201 (MQ=255)                                                                                                     gattgcttTTCGTATTATTGGCGGTGCCATAAAACAGCTGGATATCTTTTTTCAGGAAAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGGATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCCATTTC‑TTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAAACCGTTTCTTCGCCCTTTAAg                                                                                                                    >  1:106097/1‑248 (MQ=21)                                                                                                                                 aTAAACCAGCTGGATATCTTTTTCCAGGCCAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTAGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttctt                                                                                                                               >  1:101511/1‑209 (MQ=255)                                                                                                                                            ggATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCACCTGCTATGGGGGCATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGt                                                                           >  1:44139/1‑250 (MQ=255)                                                                                                                                                                acacCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATTCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATCTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTCCTTCGCCGTTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGtn                                                                <  1:59733/241‑2 (MQ=255)                                                                                                                                                                                         cAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCGCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATc                              <  1:235577/250‑1 (MQ=255)                                                                                                                                                                                                      cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATc                <  1:49795/251‑1 (MQ=38)                                                                                                                                                                                                          gCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTtctc                                                                                                                                                                                                                       <  1:225440/49‑1 (MQ=255)                                                                                                                                                                                                                    aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAcn  <  1:33266/251‑2 (MQ=14)                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                     GAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTC‑ATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACC  >  NC_000913/2288701‑2289162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.