New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	15 (1.090)	14/302	0.1	100%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

ATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTC  >  NC_000913/1300518‑1300930                                                                                                                                                                                     |                                                                                                                                                                                                                                         atcaaaagcaaaaggaataggtaaaaatattcttctcaaattacagttagttataaggatttccttaactgcttctcctctccatcatgttattttcgccacatcataatccggggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATGGTTAAATGATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTa                                                                                                                                                                    <  1:161832‑M2/71‑1 (MQ=255)       agcaaaaggaataggtaaaaatattcttctcaaattacagttagttataaggatttccttaactgcttctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAg                                                                                                                                                                   >  1:259788‑M2/175‑246 (MQ=255)                aattaggtaaaaatattctcctcaaattacagttggttataaggtttccttaaactgcttctctcccccaccattttttttcgccacatcataatcctgggcttgctgaagaagaattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTTTGCATTTCACTGCTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATttg                                                                                                                                                     <  1:291266‑M2/86‑1 (MQ=255)                aatagggaaaaatattcttcgcaaatgccagttatttataaggagttccttaactgcttctccgccccatcatgttattttcgccacatcataagcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttgggagaggaaagtgcgaaATAAGAATCAATTGTTAAATGATTGGGCACTTCACTACTAGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAAtc                                                                                                                                                             <  1:153631‑M2/78‑1 (MQ=255)                                                         ggatttccttaactgcttctcctcaccatcatgttattttcgccacatagtaatcgtggggtggctggagaatcattgaattgatattcttcattcaactgcctttggcaggggaacgtgctaaATAATAATCCATTGTTAGATGATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGAATGGATGCAAGCt                                                                                                             >  1:322850‑M2/125‑250 (MQ=255)                                                                          tctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaataattgaaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGt                                                                                            <  1:273174‑M2/143‑1 (MQ=255)                                                                          tctcctcaccatcatgttattttcgccacatcataatcctgggcttgctgaagaagaattgaaatgatattagtaattccactgccttgggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCa                                                                                                                         <  1:178523‑M2/114‑1 (MQ=255)                                                                                 accatcatgttattttagccacatcataatcctgggcttgctgaagactaattgcaatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATaaa                                                                                     >  1:73305‑M2/101‑250 (MQ=255)                                                                                                                                        aatgatattattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAANNGTAATCNNa                                                                                                                                                                                     >  2:6870‑M2/46‑99 (MQ=255)                                                                                                                                                tattaattccactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTcc                      <  1:6870‑M2/213‑1 (MQ=255)                                                                                                                                                         cactgcctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTAATGTGCATTTCAATACTGGAAATGAAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAg                                                                                                                                        >  1:286512‑M2/29‑127 (MQ=255)                                                                                                                                                          actgcctttggcagaggaaagtgctaaATAATAATAAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTACTCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCggg                   >  1:113979‑M2/28‑243 (MQ=255)                                                                                                                                                              cctttggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTaa                                           >  1:172026‑M2/24‑215 (MQ=255)                                                                                                                                                                 ntgntagngnnanntgcNAAATAATAATCAATTGTTAAANNATTGTGCATNTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTNGATTGAATTNNAANATGTGNGNNNANNNATNGATGCAAGCTATAGATTCTNATNNGGTCAANAAAAGAGAATTGCTTAACAATTTTGc                                                              <  2:73305/177‑1 (MQ=255)                                                                                                                                                                   ggtagaggaaagtgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTGCTGGAACTGTAATCAGAAACGATAGACATGCTTCGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGCGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTc  >  1:166644‑M2/19‑251 (MQ=255)                                                                                                                                                                               tgctaaATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATGTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCaactg             <  1:314394‑M2/222‑3 (MQ=255)                                                                                                                                                                                 ntAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAAc               >  1:83574/2‑224 (MQ=255)                                                                                                                                                                                     |                                                                                                                                                                                                                                         ATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAATAATAATCAATTGTTAAATTATTGTGCATTTCACTACTGGAACTGTAATCAGAAAAGATAGACATGCTTAGCCAATCTCTATTTGATTGAATTGAAAGATGTTTGTTAAGGCATGGATGCAAGCTATAGATTCTGATACGGTCAATAAAAGAGAATTGCTTAACAATTTTGCAAAATGTATTGGCGAGTAAGAACCGCATTTGGTACTTTCCGGGCAACCGCCAGACGATTC  >  NC_000913/1300518‑1300930

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.