New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1299498	0 (0.000)	15 (1.090)	14/302	0.1	100%	intergenic (+253/‑69)	ychE/insH21	MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator
	?	NC_000913	1300698 =	0 (0.000)					intergenic (+151/‑484)	insH21/oppA	IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein

ATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTT‑AACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTAT  >  NC_000913/1299319‑1299731                                                                                                                                                                                     |                                                                                                                                                                                                                                          aTCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTT‑AACTGCTTCTCCTCTCCATCATGTTATTTTCGCCACATCATAATCCGGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaatggttaaatgattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                                                                                                                    <  1:161832‑M1/251‑72 (MQ=255)       agcaaaagGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTT‑AACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttag                                                                                                                                                                   >  1:259788‑M1/1‑174 (MQ=255)               aattaggTAAAAATATTCTCCTCAAATTACAGTTGGTTATAAGG‑TTTCCTTAAACTGCTTCTCTCCCCCACCAT‑TTTTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAAGAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattttgcatttcactgctggaactgtaatcagaaaagatagacatgcttagccaatctctatttg                                                                                                                                                     <  1:291266‑M1/248‑87 (MQ=255)                aaTAGGGAAAAATATTCTTCGCAAATGCCAGTTATTTATAAGGAGTTCCTT‑AACTGCTTCTCCGCCCCATCATGTTATTTTCGCCACATCATAAGCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGGAGAGGAAAGTGCGAAataagaatcaattgttaaatgattgggcacttcactactagaactgtaatcagaaaagatagacatgcttagccaatc                                                                                                                                                             <  1:153631‑M1/243‑79 (MQ=255)                                                         ggATTTCCTT‑AACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATAGTAATCGTGGGGTGGCTGGAGAATCATTGAATTGATATTCTTCATTCAACTGCCTTTGGCAGGGGAACGTGCTAAataataatccattgttagatgattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggaatggatgcaagct                                                                                                             >  1:322850‑M1/1‑124 (MQ=255)                                                                           tctcCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggt                                                                                            <  1:273174‑M1/250‑144 (MQ=255)                                                                           tctcCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAAGAATTGAAATGATATTAGTAATTCCACTGCCTTGGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggca                                                                                                                         <  1:178523‑M1/221‑115 (MQ=255)                                                                                  aCCATCATGTTATTTTAGCCACATCATAATCCTGGGCTTGCTGAAGACTAATTGCAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaa                                                                                     >  1:73305‑M1/1‑100 (MQ=255)                                                                                                                                         aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaanngtaatcnna                                                                                                                                                                                     >  2:6870‑M1/1‑45 (MQ=255)                                                                                                                                                 tattaATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttcc                      <  1:6870‑M1/250‑214 (MQ=255)                                                                                                                                                          cACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattaatgtgcatttcaatactggaaatgaaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaag                                                                                                                                        >  1:286512‑M1/1‑28 (MQ=255)                                                                                                                                                           aCTGCCTTTGGCAGAGGAAAGTGCTAAataataataaattgttaaattattgtgcatttcactactggaactgtactcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaagaaccgcatttggtactttccggg                   >  1:113979‑M1/1‑27 (MQ=255)                                                                                                                                                               ccTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgagtaa                                           >  1:172026‑M1/1‑23 (MQ=255)                                                                                                                                                                    ggTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactgctggaactgtaatcagaaacgatagacatgcttcgccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaattttgcaaaatgtattggcgcgtaagaaccgcatttggtactttccgggcaaccgccagacgattc  >  1:166644‑M1/1‑18 (MQ=255)                                                                                                                                                                                tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctgatacggtcaataaaagagaattgcttaacaatgttgcaaaatgtattggcgagtaagaaccgcatttggtactttccgggcaactg             <  1:314394‑M1/228‑223 (MQ=255)                                                                                                                                                                                     |                                                                                                                                                                                                                                          ATCAAAAGCAAAAGGAATAGGTAAAAATATTCTTCTCAAATTACAGTTAGTTATAAGGATTTCCTT‑AACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAGATTCTGCCATGGCAAAACATGGTGGAAGTCATCGAGCCGTTTTACCCCAAGGCTGGTAATGGCCGGCGACCTTAT  >  NC_000913/1299319‑1299731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.