| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 15 (1.060) | 12/308 | 0.1 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 0 (0.000) | 12 (0.850) | 11/310 | 0.2 | 100% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCC‑CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGT > NC_000913/1105142‑1105624 | gagaaataactggctggatgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatattttcctgtgtggtacgcagtctgcgtttatccggacctacgacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGTTGACt > 1:75526‑M2/236‑251 (MQ=255)cccTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGACGTTGAGTTTACATATCTCCACCGG‑CGATCGGGTGAAAATCGGTGTTACTGTTTCTGATAGACAGTCACTTCATTTATCCCAACAATGGCCGTCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCCTAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccc > 1:239397‑M1/1‑239 (MQ=255) ccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacacttgcgatcttttcatgtgtggtacgccgtctgcgtttctccggccctaacacatcaatcatctgttctccaatgcctagtctaaaacctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGCGGAAATAGAATAAATGTTCAGAcc > 1:218412‑M2/203‑251 (MQ=255) ccgtcatccccggttcaaagctctgctgaacaatggcggtctgttcctgtgtggtacgccgtctgcgtgtctccggcgctaatacatcaatcatctgttctccaatgactagtctaaaaactattattaagactatcacttatttaagagatattgtttgtcgggagattcatggggccagtctaACCCTGAATGATGACTAATCATTGATGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTa < 1:303165‑M2/66‑1 (MQ=255) acaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctacaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagaggcccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTAtt > 1:190576‑M2/157‑251 (MQ=255) caattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacgtatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGTAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTg < 1:282878‑M2/96‑1 (MQ=255) aCTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcac < 1:180797‑M1/250‑98 (MQ=255) nnnncngtnNCTTCNTTTATCACAACAATGGCCGCCCTCNTCAGAAAAGGCTTAATTTGTTGAAAGATCGANCNTAATATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAANGTAAGGATAANACANNCCTgngntntgcgccgatatttccatacatctgttatcncttaacccattacaagcccgctgnngcnnntanncccgt < 2:239397‑M1/213‑76 (MQ=255) cacaACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac > 1:135037‑M1/1‑122 (MQ=255) acaacaATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacn < 1:80335‑M1/251‑131 (MQ=255) ncggncnnannacancaatcatctgttctccaaggannattctaaaanctagtattaagactatcacttatttaagtgatattggttgtctggagattcagngggcctgtcnnACNCTCAGNGNNNANNNATNATTGAGGAAATAGAATAAANGTNNAGACCTNTTTTAAACTCTCTTATGCTCGGCAgt < 2:75526‑M2/77‑1 (MQ=255) gccgccCTCTTCAGAAAAGACTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcaggtattcccgt > 1:91947‑M1/1‑112 (MQ=255) nacatcaatcatctgttctccaatgcctagtctaaaaactagaattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAgg > 1:204778‑M2/104‑113 (MQ=255) gacatcaatcatctgtgctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAgg < 2:204778‑M2/10‑1 (MQ=255) ccTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttcaagacatctgttatcacttaacccattacacgcccgctgccgcagatatt > 1:122323‑M1/1‑107 (MQ=255) tCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttctagacatctgttatcacttaacccattataagcccgctgccgcagatattcccgtgtcgcgcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttg < 1:258490‑M1/250‑149 (MQ=255) atgactagtctaaaaactagtattaagactatcacttattaaagggatattggttgtctgaagattcagcgggccagtctaACCCTCAAGGATGACTAATCATTGTGGACATAGAATAACTGTTCAGACTTTTTTTACACTCTCTAATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGATGGAAGCACCGAGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTc > 1:172288‑M2/82‑251 (MQ=255) gtattaagactatcacttatttaagtgatattgtttgtctgtagaatcaggggtccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTtaaan < 1:35921‑M2/59‑2 (MQ=255) aTCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgcagcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttata > 1:144825‑M1/1‑60 (MQ=255) atatcacttaaataagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCGGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATgg < 1:276625‑M2/142‑1 (MQ=255) tGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagagattcccgtggcgagcgataacccagcgcactattcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgta < 1:292150‑M1/236‑189 (MQ=255) nggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCACACAGAATGGTTCTAt > 1:203339‑M2/32‑251 (MQ=255) ggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCGCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGAc < 1:241105‑M2/167‑1 (MQ=255) ggttgnntgnnnatnnagggggccagtctaACCCTCAAGNATGACTAATCATTGAGGAAATAGAATAAANGNTNAGACNNTTTNTAAACTCTCTNATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCNTNCAAGGGGGCGTGATCCATTTTTATGGCCAAANTGTGGAACCGGCATGTGAc > 2:241105‑M2/31‑197 (MQ=255) aGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac > 1:13990‑M1/1‑32 (MQ=255) tggagattcagggggccagtataACCCTCAAGGATGACTACTCATTGAGGGAATGGCATACATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTACGGGc > 1:303709‑M2/24‑250 (MQ=255) caACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgcctttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactcc < 1:135046‑M1/251‑245 (MQ=255) | CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCC‑CCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGT > NC_000913/1105142‑1105624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |