Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,269,876 IS5 (+) +4 bp intergenic (+309/‑100) lpxT → / → mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2269876 =0 (0.000)11 (1.160) 8/312 0.1 100% intergenic (+309/‑103) lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
?NC_000913 2288919 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 22698790 (0.000)9 (0.940) 7/314 0.2 100% intergenic (+312/‑100) lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

GTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAG  >  NC_000913/2288688‑2289157
                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                              
gTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCggg                                                                                                                                                                                                                             <  1:73404/251‑1 (MQ=255)
                                                                          tacttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTGTCTCCCGTAAATGCCtt                                                                                                                                                    <  1:125965/250‑1 (MQ=255)
                                                                           acttacACCAAATTCTTTTCTATGCTGTTCTCCGCCAGGATAGATTTTCGTATTATTGGCGGTCACCTCAACCAGCTGGATATATTTTTCCCAGACAACACCATCAACAGTCTCATCATACCCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGGGCGAATAAGCTGGGCAATTTTTCTCAGCTGAATCAGTCATTTTATTTCTTCATGTTTGCGCAGATTTTTTGTCCCGTCAATGACttt                                                                                                                                                   >  1:147122/1‑249 (MQ=255)
                                                                                                                                                 aCCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATGCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTGTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc                                                                                                      <  1:189183/225‑1 (MQ=255)
                                                                                                                                                 aCCAGCTGGATATCTTTTTCCAGGACAACACAATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTccaac                                                                            >  1:15895/1‑248 (MQ=255)
                                                                                                                                                                                   cAACTGTCNCNNNANNCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGNGACTAAGCGGGGAAANTCNTCTCNGCTNACTCAg                                                                                                                                                                                                      >  2:153614/1‑95 (MQ=255)
                                                                                                                                                                                                     cAACAGTTGATGCCAATGCGATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGTCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATc                         <  1:159894/250‑1 (MQ=255)
                                                                                                                                                                                                                      ncTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAcc                                                                                                                                 >  1:42454/2‑129 (MQ=255)
                                                                                                                                                                                                                           gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCGTGAATCAGCCTAGTTAGTCTGTTTCGTCGCCATTTAAGGCGTTATCCCCAGTTATTAGTGAGATCTCTCCCACTGACGTATCATGTGGTCCGCCCGAAACAGGTTGGCGAGCGTGAATAGCATCGCTAGTTGGTTATCGTTTTTCAg  <  1:92889/251‑1 (MQ=11)
                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                              
GTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAG  >  NC_000913/2288688‑2289157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.