| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 11 (1.160) | 8/312 | 0.1 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 9 (0.940) | 7/314 | 0.2 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGC > NC_000913/2269637‑2270103 | gctgaaaaacgataaccaactggcgatgttattcacgcaggacaacctgtttcgggcggacaaaatgatacgtcagtgggagaaatctcactaaaaactggggataacgccttcaatggcgaagaaccggtctaaataggctgcttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttacCTTAAGGAAtt < 1:160854‑M1/11‑1 (MQ=255) aTCGAACGCAAAAAGCATTCTCTAAGTAAATTAATGGATTGCATTCTTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTGCTGTAGCTCTTTTTCTTATAAAAAATCATGTAAGACCGCTCGCCAAGACCCCACCAATCGGCTAAGCTCGAGCGCGTGTTGCCGCGGCGTTAG‑TTGTGCCTCTCATTGTATAATTGTTAGCGTTAGTCCACAGAATTGGCCTTaggacggttcgaac < 1:161785/250‑14 (MQ=255) tgaatgGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgttt < 1:124291‑M1/245‑39 (MQ=255) ggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTtgn > 1:131347‑M1/202‑250 (MQ=255) ggcggaccaaatgatacgtcagtgggagagatctcactaacaactggggataacgccttaaatggagaagaaacggtctacataggctgattcaaggcatttacgggagaaaacatcggctcaaccatgaagaaatgaaatgactgagtcagccgagaagcatttccccgcttattcgcaccttcaCTTAAGGAATTGTTTCACCATGCCCAGGTAATTAGACTCGTGTCGCTTGGCATTTTTTTATAACg < 1:147525‑M1/65‑1 (MQ=255) ccGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgataggagatcaggtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcn < 1:40722‑M1/251‑93 (MQ=255) actggggataacgccttaaatggcgaagaaacggtataaataggctgattccaggcatttacgggagaaaacatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTCGTCTCGTGTCGCTTGGCATTTTTTTATACCGATATTTGTCGTTAAGGACTTCCAGGGAAAACAAACAACATgg < 1:89666‑M1/107‑1 (MQ=255) gggatcacgacttaaatggcgaagcaaaggtctaaataggatgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaactgaaatgactgagtcagccgagacgaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCa < 1:67840‑M1/110‑1 (MQ=255) gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCa < 1:61016‑M1/110‑1 (MQ=255) cgaagnnacnnnctnnataggctgattcaaggcatttacnggagaaaaaatcggctcaaacatgaagaantnanatganngagncagccgagaanaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGNCNAgg < 2:161109‑M1/28‑1 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatgcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAgg > 1:161109‑M1/122‑149 (MQ=255) tGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacacgtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag > 1:97229‑M1/1‑116 (MQ=255) ccGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGGAGATTAT‑CCTCACCGCATCTACTTTTCTGCGTTTGTCCACAGATTTGGCCTTAggaaggtgagaaccagtccctgatctgagatcatgtttgtcatatggagccattgaaaagggttcatcatgagtcatcaccttcccttcgccgacagtgaattccgcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcctgg > 1:114141‑M1/1‑96 (MQ=255) aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGattn > 1:130891‑M1/94‑250 (MQ=255) ggctcaaacatgaagaaatgaaatgacggagtcagccgagaagaatttccccgcttagtcgcaccttccTTTAAGTAATTGTTTCAACATGTCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACt > 1:141461‑M1/70‑153 (MQ=255) gATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtnngtcatcn > 2:15846‑M1/1‑52 (MQ=255) tCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatcttgagccatagagcaggtttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctggtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccc < 1:217127‑M1/249‑206 (MQ=255) gtgCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagtgttcctcatgagtcatcaacttaccttcgccgacagtgaattccgccgtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagtttctgccatggcaaaacatggtggaagtcatcgagccgttttaccccaagcctggtaatggccgg > 1:34615‑M1/1‑27 (MQ=255) tgCGTTAGNCNNNANNTTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatntttgtcctctggagcnatngaacngggntcctcatgag > 2:153161‑M1/1‑26 (MQ=255) tAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgttttaccn < 1:20346‑M1/226‑206 (MQ=255) gcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTATCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTc < 1:108116‑M1/74‑1 (MQ=255) tAAGGCATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCCTTCTTTTATAACGATATTTGTCGTTAAGAACTTCAAGGGAAAACAAAACACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGACGTAGCGGTTCTGCTTTCTGCATGTCGTGCACCTAACCCCGCAAAGAatat > 1:202997/1‑208 (MQ=255) | TCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTAT‑CCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCAAAGAATATGCATCCTGAGACACGTGC > NC_000913/2269637‑2270103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |