| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,549,192 | Δ39 bp | coding (385‑423/903 nt) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4549192 | 4549230 | 39 | 12 [0] | [0] 12 | fimH | type 1 fimbriae D‑mannose specific adhesin |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4549191 | 0 (0.000) | 12 (1.200) | 11/294 | 0.1 | 100% | coding (384/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin |
| ? | NC_000913 | 4549231 = | 0 (0.000) | coding (424/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin | |||||
TCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC > NC_000913/4549014‑4549467 | cgtggatctttcgacgcaaatcttttgccataacgattatccggaaaccattacagactatgtcacactgcaacgaggctcggcttatggcggcgtgttatctaatttttccgggaccgtaaaatatagtggcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttataattcgagaacggagaagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTtgn < 1:54861‑M2/34‑2 (MQ=255) gcaaatcttttgccataacgattatccggaaaccattacagactatgtcacactgcaacgaggctcggcttatggcggcgtgttatctaatttttccgggaccgtaaaatatagtggcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttataattcgagaacggataagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACt > 1:181304‑M2/203‑251 (MQ=255) ctgcaacgaggctcggcttatggcggcgtgttatctaatttttccgggaccgtaaaatatagtggcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttataattcgagaacggataagccgtggccggtggcgcttAAAGCTGGCTCATTAATTTCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATgattttc > 1:19240‑M2/151‑215 (MQ=255) ctaatttttcccgggaccgtaaaatatagtggcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttatacttcgagaacggataagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGc > 1:105937‑M2/118‑251 (MQ=255) accgtaaaatatagtggcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttatgattcgagaacggataagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGGCAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTAc < 1:247188‑M2/113‑1 (MQ=255) gtaaaatatagttgcagtagctatccatttcctaccaccagcgaaacgccgcgcgttgtttataattcgagaacggataagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACGGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTAc < 1:97730‑M2/152‑1 (MQ=255) tcgagaacggataagccggtgccggtggcgcttAAAGCTTGCTCATTTATTTCCGTGCTTATTGTGCGACATGCCAACAACTATAACAGCGATGAATTTCAGGTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTTCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTTCGAAAAGCCAAAAcc < 1:212295‑M2/217‑1 (MQ=255) ngaacggnnaagccgtggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTcc < 2:19240‑M2/67‑1 (MQ=255) ggccggtggcgcttAAAGCTGTCTCATTAATTGCCGTGCTTATTTTGCGACAg < 1:87277‑M2/39‑1 (MQ=255) ggccggtggcgcttAAAGCTGGCTCATTAATTGCCGTGATTATTTTGCGACAGACAAACAACTATAACAGCGATGATTTACAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTAACCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGc > 1:189235‑M2/15‑251 (MQ=255) gcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTa < 1:18934‑M2/151‑1 (MQ=255) gcgcttAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATANNTACGCCnnt > 2:18934‑M2/7‑99 (MQ=255) | TCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTATTGTGCGAAAAGCCAAAACCTGGGGTATTACCTCTCCGGC > NC_000913/4549014‑4549467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |