| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,549,192 | Δ39 bp | coding (385‑423/903 nt) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4549192 | 4549230 | 39 | 12 [0] | [0] 12 | fimH | type 1 fimbriae D‑mannose specific adhesin |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4549191 | 0 (0.000) | 12 (1.200) | 11/294 | 0.1 | 100% | coding (384/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin |
| ? | NC_000913 | 4549231 = | 0 (0.000) | coding (424/903 nt) | fimH | type 1 fimbriae D‑mannose specific adhesin | |||||
CGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTT‑CCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTAT > NC_000913/4548975‑4549428 | cGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTT‑CCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGAGAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgn < 1:54861‑M1/251‑35 (MQ=255) gCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTT‑CCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaact > 1:181304‑M1/1‑202 (MQ=255) cTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTT‑CCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaatttccgtgcttattttgcgacagaccaacaactataacagcgatgattttc > 1:19240‑M1/1‑150 (MQ=255) cTAATTTTTCCCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATACTTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttctgc > 1:105937‑M1/1‑117 (MQ=255) aCCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATGATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcggcagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctac < 1:247188‑M1/215‑114 (MQ=255) gTAAAATATAGTTGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctacgggcggctgcgatgtttctgctcgtgatgtcaccgttac < 1:97730‑M1/251‑153 (MQ=255) tCGAGAACGGATAAGCCGGTGCCGGTGGCGCTTaaagcttgctcatttatttccgtgcttattgtgcgacatgccaacaactataacagcgatgaatttcaggttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttcttctcgtgatgtcaccgttactctgccggactaccctggttcagtgccaattcctcttaccgtttattgttcgaaaagccaaaacc < 1:212295‑M1/250‑218 (MQ=255) ngaaCGGNNAAGCCGTGGCCGGTGGCGCTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttcc < 2:19240‑M1/96‑68 (MQ=255) ggCCGGTGGCGCTTaaagctgtctcattaattgccgtgcttattttgcgacag < 1:87277‑M1/53‑40 (MQ=255) ggCCGGTGGCGCTTaaagctggctcattaattgccgtgattattttgcgacagacaaacaactataacagcgatgatttacagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttctgctcgtgatgtcaccgttactctgccggactaacctggttcagtgccaattcctcttaccgtttattgtgcgaaaagccaaaacctggggtattacctctccggc > 1:189235‑M1/1‑14 (MQ=255) gcgcTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatatttacgccaataatgatgtggtggtgcctactggcggctgcgatgtttctgctcgtgatgtcaccgtta < 1:18934‑M1/157‑152 (MQ=255) gcgcTTaaagctggctcattaattgccgtgcttattttgcgacagaccaacaactataacagcgatgatttccagtttgtgtggaatanntacgccnnt > 2:18934‑M1/1‑6 (MQ=255) | CGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTT‑CCGGGACCGTAAAATATAGTGGCAGTAGCTATCCATTTCCTACCACCAGCGAAACGCCGCGCGTTGTTTATAATTCGAGAACGGATAAGCCGTGGCCGGTGGCGCTTTATTTGACGCCTGTGAGCAGTGCGGGCGGGGTGGCGATTAAAGCTGGCTCATTAATTGCCGTGCTTATTTTGCGACAGACCAACAACTATAACAGCGATGATTTCCAGTTTGTGTGGAATATTTACGCCAATAATGATGTGGTGGTGCCTACTGGCGGCTGCGATGTTTCTGCTCGTGATGTCACCGTTACTCTGCCGGACTACCCTGGTTCAGTGCCAATTCCTCTTACCGTTTAT > NC_000913/4548975‑4549428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |