Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,319,850 IS2 (+) +5 bp coding (23‑27/2850 nt) rcsC ← histidine kinase RcsC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2068941 =NA (NA)6 (0.590) 5/298 0.4 100% noncoding (1331/1331 nt) IS2 repeat region
?NC_000913 2319850 = 0 (0.000)coding (27/2850 nt) rcsC histidine kinase RcsC
* ? NC_000913 = 23198540 (0.000)10 (0.990) 7/298 0.2 100% coding (23/2850 nt) rcsC histidine kinase RcsC
?NC_000913 = 2997691 NA (NA)noncoding (1/1331 nt) IS2 repeat region

ACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGCTTCTCTGTAATGTTTATCTTTTTCCAGATAACCTGGGGATTCTCCCCCTAAATCAAGCTGTAACGTTATTCTTTCATAACCTTTATCTATGAGGTGGTTCAACCTCGTTGTTGAAAGAGTTTCATCCAGTTCATTGACTTTAGCTTCGCGTAGTAAATCAGAGAC  >  NC_000913/2997506‑2997931
                                                                                                                                                                                         |                                                                                                                                                                                                                                                
aCCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAg                                                                                                                                                                                 <  1:99781/251‑1 (MQ=255)
  cGTCATCCCCGTGTCAAAGCTCTGCTGAACAATGTCGATCTTTGCCTGTGTGGGTCGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCGAAAAACTAGTATTAAGACTATCACTTAGTTAAGTGATAGTGGTTGGCTGGACATGCAGGGTGCCAGTCTAATCTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGcc                                                                                                                                                                               <  1:228278/251‑1 (MQ=18)
         cccGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTTTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTTTAGGATAAATAACATTAAGTAAAGcc                                                                                                                                                                               <  1:202394/244‑1 (MQ=255)
                                                           ccGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAGCTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGGTCTTTTCTTCGGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAgn                                                                                                                                                                                <  1:30154/193‑2 (MQ=255)
                                                                     ttCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGCTTCTCTGTAATGTTTATCTTTTTCCAGATAACCTGGGGATTCTCCCCCTAAATCAAGc                                                                                                             <  1:100827/250‑1 (MQ=255)
                                                                                        caatcaTCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTGATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTGCTTCTTGTGTTTAGCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGCTTCTCTGGAATGTTTATCTTTTTCCAGATAACCTGGGGAGTCTCCCCCTAAATCAAGCTGTAACGTTATTCTTTCan                                                                                          <  1:30773/250‑2 (MQ=37)
                                                                                                      ccAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGc                                                                                                                                                                       >  1:69777/1‑159 (MQ=255)
                                                                                                                                                                               gggCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGCTTCTCTGTAATGTTTATCTGTTTCCAGATAACCTGGGGATTCTCCCCCTAAATCAAGCTGTAACGTTATGCTTTc                                                                                            <  1:85865/161‑1 (MQ=255)
                                                                                                                                                                               gggCCAGTCTAAACTTGCTCGTTTCTTCTGGTGTTTATCCTTTAAAGATTTGTAGTATAAATAACATTTAGTAAAGCCGCATCCGTTTCCCTGTAATGTTTATCTTTTTCCAGATAACCTGGGGATTCTCCCCCTTAATCAAGCTTTAACGTTATTCTTTCATAACCTTTATCTATTATGTGGTTCAACCTCGTTGTTGAAAGAGTTTCATCCATTTCATTGCCTTTAGCTTCGCTTATTAAATCAGAGAc  <  1:228255/251‑1 (MQ=255)
                                                                                                                                                                                         |                                                                                                                                                                                                                                                
ACCGTCATCCCCGGTTCAAAGCTCTGCTGAACAATTGCGATCTTTTCCTGTGTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAAACTTGCTCTTTTCTTCTGGTGTTTATCTTTGAAAGATTTGTAGGATAAATAACATTAAGTAAAGCCGCATCGGCTTCTCTGTAATGTTTATCTTTTTCCAGATAACCTGGGGATTCTCCCCCTAAATCAAGCTGTAACGTTATTCTTTCATAACCTTTATCTATGAGGTGGTTCAACCTCGTTGTTGAAAGAGTTTCATCCAGTTCATTGACTTTAGCTTCGCGTAGTAAATCAGAGAC  >  NC_000913/2997506‑2997931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.