| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2068941 = | NA (NA) | 6 (0.590) | 5/298 | 0.4 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 2319850 = | 0 (0.000) | coding (27/2850 nt) | rcsC | histidine kinase RcsC | |||||
| * | ? | NC_000913 | = 2319854 | 0 (0.000) | 10 (0.990) | 7/298 | 0.2 | 100% | coding (23/2850 nt) | rcsC | histidine kinase RcsC |
| ? | NC_000913 | = 2997691 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGAT > NC_000913/2319626‑2320036 | tCTGCAGATAAGCGAGTTTCGGCGATGTACTTCAGCTCTTTAATCACATCAGAGGTGCGCTGACTAACGCGATGAGCCTGATCGGAAATCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGAAAATAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGCCTTTCAGGGTTGTACtagactg > 1:252483‑M1/1‑229 (MQ=255) naagCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGCACATGTAGCGCGAGGCTTTCAGGGTTGTACtcgactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgg > 1:51204‑M1/2‑164 (MQ=255) gATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGACAGAGCAATAACGCCAATGCTCTGAACATGTAGCGCGAGGCGTTCAGGGTTGTACtagacgggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactaggttttagactagtcattggagaacagatgattgatg < 1:46534‑M1/251‑102 (MQ=255) gATCGGAACTCAGATTAAATTCCTGACGAATTGCCGATTCTCGCTGATGTAACGCAGTAACGATGTAAAAAACGGATGAAAAAGCAAGCAACAGCCAGAGCACTAACGCCAATGCTATGAACAGGGAGCGAGAGGCGTTCAGGGTTGGACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagttgttagactagtcagtggagaacagatgattgatg < 1:46538‑M1/251‑102 (MQ=255) tgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTctctcttctn < 1:204223‑M2/111‑2 (MQ=255) tGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCACTCAACAGCCAGAGCACTAACGCCAATGATCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa > 1:96268‑M1/1‑103 (MQ=255) aTGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacgtaaataagtgataggcttaatactagtttttagactagtcagtggagaacagaggatggatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcag < 1:123317‑M1/251‑164 (MQ=255) ctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataccagatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGt > 1:215721‑M2/82‑160 (MQ=255) gATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTGGCGCGAGGCTTTCAGGGTTGTACtagtctggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacgg > 1:45282‑M1/1‑76 (MQ=255) gATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGTGGCTTTCAGGCTTGTACtcgactggccccatgaatctccaga > 1:122476‑M1/1‑76 (MQ=255) aaGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagtgctttgaaccgtggatga < 1:214486‑M1/251‑183 (MQ=255) gcggcagcgggcttgtaatgggttaagtgatancagatgtctnnaantatagngnnnannncaNGTACGAAAAGAAGCAAGGTNTTNNAAAGGGNCGAAGCTCCGCCTCAGGTGACAGATg < 2:55722‑M2/58‑1 (MQ=255) gcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggccaatccaTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATg > 1:55722‑M2/64‑121 (MQ=255) gcagcgggcttgtaatgggttaagtgataacagatgtatggcaatttaggggcaaatcccTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGACGCTCCg > 1:166835‑M2/61‑102 (MQ=255) cAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACtagactggcc < 1:125632‑M1/65‑11 (MQ=255) gatgtctggaaatataggggcaaatccaTGTACGAAAAGAAGCAAGGTATTTCACAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTtctc > 1:223874‑M2/29‑132 (MQ=255) | TCTGCCGATAAGCGATTTTCGGCGATGTACTTCAGCTCTTTCATCACATCAGAGGTGCGTTGAATAAAGCGCTGAGCCTGATCGGAACTCAGATTAAATTCCTGACGAATTTCCGATTCTCGCTGATGTAACGCATTAACGATGTAAAAAACGGATGAAAAAGCAATCAACAGCCAGAGCACTAACGCCAATGCTCTGAACATGTAGCGCGAGGCTTTCAGGGTTGTACGAAAAGAAGCAAGGTATTTCAAAGGGGCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGAT > NC_000913/2319626‑2320036 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |