Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,269,876 IS5 (+) +4 bp intergenic (+309/‑100) lpxT → / → mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2269876 =0 (0.000)12 (1.190) 10/296 0.1 100% intergenic (+309/‑103) lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
?NC_000913 2288919 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 22698790 (0.000)12 (1.180) 11/298 0.1 100% intergenic (+312/‑100) lpxT/mepS lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGC  >  NC_000913/2288679‑2289050
                                                                                                                                                                                                                                                |                                                                                                                                   
ttGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGGACTGATACCCTCCGTTAATTTCAGTATGATTACTTACACCAAACTCTTTCATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCTCATAAACCAGCGGGATAGCGGGTTCCAGGACAACACCATCATCGGTCTCACCATACTCAACAGTTGATGCCAACGTTATGGGTGAATATAAGGAAGGTGCg                                                                                                                            <  1:79210/250‑1 (MQ=255)
                   aCTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTAATTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTAGTATTATTGGCGGTCCCATAAAACAGCCGGGTATCTTTTTCCAGGACAAAACCATCAACTGTCTCACCATACTCAACAGGTGATGACAAAGGTATGGGGGGATATAAGGAAGGGGAGAATAAGGGGGGAAAttcttc                                                                                                        >  1:229007/1‑251 (MQ=255)
                        gTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTAGTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                                                                   <  1:134071/251‑1 (MQ=255)
                                cggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAGTCTTCTCGGCTGACTCAg                                                                                           <  1:74155/251‑1 (MQ=255)
                                      cattcattTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGGCAAAACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcattt                                                                                     >  1:56462/1‑251 (MQ=255)
                                                                                                                       cAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAGTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg    <  1:243963/251‑1 (MQ=255)
                                                                                                                         ggATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc  >  1:13923/1‑251 (MQ=255)
                                                                                                                                                 gTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCCCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATCTCAGCAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCAGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg    >  1:138429/1‑225 (MQ=255)
                                                                                                                                                                                                              naaCAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCg                                                                                                                            >  1:50287/2‑44 (MQ=255)
                                                                                                                                                                                                                      gATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                              >  1:72534/1‑114 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                   
TTGATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGC  >  NC_000913/2288679‑2289050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.