| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 12 (1.190) | 10/296 | 0.1 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 12 (1.180) | 11/298 | 0.1 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCA > NC_000913/2269636‑2270077 | ttCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaagg < 1:62583‑M1/250‑7 (MQ=255) naacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaataggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCAt < 1:31759‑M1/53‑1 (MQ=255) gcggaccaaatgatacgtcagtgggagagatctcacgaaaaactggggataacgccttaaaaggcgaagaaacggtcgaaataggcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGGTTCAACatn > 1:23334‑M1/186‑206 (MQ=255) aCTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc < 1:90829‑M1/251‑66 (MQ=255) gatacgtcagtgggagagatatcactacaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGtt < 1:80421‑M1/77‑1 (MQ=255) gtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatgtacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGACCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTc < 1:15802‑M1/86‑1 (MQ=255) ccGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCCAGAACGCCCCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATACTCACAGAATATATTTTTGTGCGTTAGACCACAGATTTGGCCTTAggaaggtgagaaacagcccctgatttgcgatcatgtttggcatctggagccacagaacagaggtcatcatgagtcatcaacttaccttcgcc > 1:139879‑M1/1‑159 (MQ=255) nncctnaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAg > 2:159968‑M1/134‑139 (MQ=255) ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAAcc < 1:140283‑M1/120‑1 (MQ=255) cgaagaaccggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagcagaatttccccgcttattcgcaccttccCTTCAGGAATTGTTTCAACATGCCCAGGTCATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAaaac < 1:174156‑M1/96‑1 (MQ=255) ccAAGACCGCACCAATCGGGTAATCTCGCACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtt > 1:19000‑M1/1‑102 (MQ=255) ccAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTGGTGCGGTAGGCCACAGAGTTGGCCTGAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:134255‑M1/151‑61 (MQ=255) caaacctgaagaaatgaaatgactgantcagccnngangaatttccccgcttattcgnacnnncnNNTNCGGAANTGNNTCAACATGCNCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTNAGGACTTCANNGGAAAACAAACAACATGGTCANATCNNANNCNATTNTg < 2:58556‑M1/127‑1 (MQ=255) caaacatgaagaaatgaaatgactgagtcagacgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAg > 1:104281‑M1/66‑251 (MQ=255) tgtctcgGCGGTAGAGTATCCTCGCAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaag < 1:235799‑M1/78‑17 (MQ=255) gCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc < 1:191210‑M1/171‑108 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGAAAATAacac > 1:58556‑M1/54‑251 (MQ=255) aGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAggcaggcgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaacatggtggaagtcatcgagccgt > 1:12162‑M1/1‑53 (MQ=255) ctgagtcagccgagaagaatttccccgcttattcgcaccttccCTTAAGGAATTGTTTCAACATg < 1:98503‑M1/22‑1 (MQ=255) agtcanncgnnnagnntttccccgcttattcgcaccttcnCTTAAGGAATTGTTTCAACATGCACAGGTNANTNGTCTNNTGTNGATTGGCATTNTTTTATAACGATATTTGTCGTTAAGGACTTCACGGGAAAACACACAACNTNGTCAAATCTCAACCGATTTTGCGATATAtctnt < 2:191260‑M1/139‑3 (MQ=255) cGTTAGTCCACAGATTTGGCCTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc < 1:191733‑M1/131‑108 (MQ=255) cacaGATTTGGCCTTAggacggtgcgaacaagtcc > 1:82085‑M1/1‑16 (MQ=255) ccTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcc < 1:5673‑M1/151‑147 (MQ=255) ccTTAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgccagaccagaaaagagattttcttgtcccgcatggagcagattctgccatggcaaaac < 1:147183‑M1/181‑177 (MQ=255) | TTCATCTATCGAACGCAAAAATCATTCTCTAAGTAAATGAATGGATTGCATGCGTTTCACTCAATTGTACTTTAATTGACCAACCCCGCTTATTAACTTTCTGTATCACTTTTTCTTATAAAAAATCATGTAAAACCGCTCGCCAAGACCGCACCAATCGGGTAATCTCGAACTCGTTTTGCCTCGGCGGTAGATTATCCTCACAGCATATAATTTTGTGCGTTAGTCCACAGATTTGGCCTTAAGGAATTGTTTCAACATGCCCAGGTAATTAGTCTCGTGTCGCTTGGCATTTTTTTATAACGATATTTGTCGTTAAGGACTTCAAGGGAAAACAAACAACATGGTCAAATCTCAACCGATTTTGAGATATATCTTGCGCGGGATTCCCGCGATTGCAGTAGCGGTTCTGCTTTCTGCATGTAGTGCAAATAACACCGCA > NC_000913/2269636‑2270077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |