Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,105,376 IS2 (–) +5 bp intergenic (+83/‑34) csgC → / → ymdA curlin chaperone/uncharacterized protein YmdA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 381260 =NA (NA)13 (1.290) 10/296 0.1 100% noncoding (1/1331 nt) IS2 repeat region
?NC_000913 1105376 = 0 (0.000)intergenic (+83/‑38) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
* ? NC_000913 = 11053800 (0.000)7 (0.690) 6/298 0.3 100% intergenic (+87/‑34) csgC/ymdA curlin chaperone/uncharacterized protein YmdA
?NC_000913 1467910 = NA (NA)noncoding (1331/1331 nt) IS2 repeat region

GAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGT  >  NC_000913/1105128‑1105565
                                                                                                                                                                                                                                                        |                                                                                                                                                                                             
attgcttacgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaAcc                                                                                                                                                                                             <  1:95363‑M2/3‑1 (MQ=255)
              cccTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccc                                                                                                                                                                               <  1:168075‑M1/251‑13 (MQ=255)
                  ttCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTCATGGCCAGTCACTTCATTTATCGCAACAATGACCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATACGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAACGTATGGATAACACAACCCTtggatttgcccctat                                                                                                                                                                            >  1:107630‑M1/1‑235 (MQ=255)
                                    caccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATg                                                                                                                                                                                   >  1:3435‑M2/213‑225 (MQ=255)
                                                                 gtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccggctgcgtttctccggccctaagacatcaatcatctggtctccaatgactaggctaaaaactagtattaagactatcacgtatttaagtgagattggttgtctggagattcagggggccagtctaaccn                                                                                                                                                                                            <  1:33024‑M2/4‑2 (MQ=255)
                                                                              cGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATTGCCGCCCTCTTCAGAAAAGTCTTAATGTGTTGAAATATCAAGCATAAGATGAATCTGGAGATAATGCTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcggatttgtccctatagtaccacacatctgttatcacttaacccatgacaagcccgctgccgcatatattcccgtg                                                                                                               <  1:249628‑M1/251‑77 (MQ=255)
                                                                                                   ngatcttttcctgtgtggtacgccgtctgcgtttctcaggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGCTGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAActctc                                                                                                                                 >  1:51991‑M2/150‑212 (MQ=255)
                                                                                                         tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGctn                                                                                       <  1:153898‑M2/105‑2 (MQ=255)
                                                                                                         tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGa                                                                                     <  1:96947‑M2/107‑1 (MQ=255)
                                                                                                         tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGGTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGc                                                                                         <  1:228368‑M2/103‑1 (MQ=255)
                                                                                                           tcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagggatattggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCGTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTAGTGCCATTGCTGGAAg                                                                                   <  1:167435‑M2/109‑1 (MQ=255)
                                                                                                                     gTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAATTCTTAATTTGTTGAAATATCGATCATAAGAGGAATCTGTAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGGATGGATAACACATCCCTtggattttcccctatatttccagacagcttttatcacgtaatccattacaagcccgctgccgcagagattcccgtggcgagcgataacccatcgcactatgcggatgccattcgt                                                                        <  1:166076‑M1/251‑116 (MQ=255)
                                                                                                                                   cacaACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGCAATATCGAGCATAAGATGAATCTGGCGAGAATGGTCTGCTGCGACTCAGCCAACCTGCAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac                                                          >  1:44645‑M1/1‑122 (MQ=255)
                                                                                                                                           ccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagacgatcacttatttaattgatagtggctgtctggagattcagggtgccagtctaACGCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTGTTCCTTTTATTGCCATTGCGGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATgg                                                  <  1:98642‑M2/142‑1 (MQ=255)
                                                                                                                                                             aaGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCGGAAAGTATGGATAACACAACCCTtggattttcccctatattaccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgatagcccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgt                                <  1:172987‑M1/251‑156 (MQ=255)
                                                                                                                                                              aGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAAAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAAccc                                                                                                                                                                                            <  1:207258/94‑1 (MQ=255)
                                                                                                                                                               gttctccaatgacgagtctaaaaacgagtattaagactatcacttatttaagtgatattggttgtcgggagattcatggggccagtctaACCGGCAATGATGACTAATCATTGAGGAAATAGGATAAATGTTCAGACCTTTTTTAAAc                                                                                                                                     <  1:225498‑M2/59‑1 (MQ=255)
                                                                                                                                                                    ncaatgannagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATg                                                                                                                                                                                   <  2:3435‑M2/13‑1 (MQ=255)
                                                                                                                                                                                              taagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctcAACCTCAAGGATGACAAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTATCTTATGCTCGGCAGTTTGTTTTTTCCTTCTATTGCCATTGCTGGACGCACCGTGCACGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCCCCCGt  >  1:243185‑M2/59‑248 (MQ=255)
                                                                                                                                                                                                                                     tGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagac                                                                                                                                     <  1:232554‑M1/78‑55 (MQ=255)
                                                                                                                                                                                                                                                 cagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGAt                                                              <  1:121138‑M2/130‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                             
GAAGCAAGAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGT  >  NC_000913/1105128‑1105565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.