| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 13 (1.290) | 10/296 | 0.1 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 0 (0.000) | 7 (0.690) | 6/298 | 0.3 | 100% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGT > NC_000913/1105142‑1105565 | cccTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccc < 1:168075‑M1/251‑13 (MQ=255) ttCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTCATGGCCAGTCACTTCATTTATCGCAACAATGACCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATACGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAACGTATGGATAACACAACCCTtggatttgcccctat > 1:107630‑M1/1‑235 (MQ=255) caccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATg > 1:3435‑M2/213‑225 (MQ=255) cGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATTGCCGCCCTCTTCAGAAAAGTCTTAATGTGTTGAAATATCAAGCATAAGATGAATCTGGAGATAATGCTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTcggatttgtccctatagtaccacacatctgttatcacttaacccatgacaagcccgctgccgcatatattcccgtg < 1:249628‑M1/251‑77 (MQ=255) ngatcttttcctgtgtggtacgccgtctgcgtttctcaggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGCTGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAActctc > 1:51991‑M2/150‑212 (MQ=255) tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGctn < 1:153898‑M2/105‑2 (MQ=255) tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGa < 1:96947‑M2/107‑1 (MQ=255) tttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGGTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGc < 1:228368‑M2/103‑1 (MQ=255) tcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagggatattggttgtctggagatgcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCGTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTAGTGCCATTGCTGGAAg < 1:167435‑M2/109‑1 (MQ=255) gTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAATTCTTAATTTGTTGAAATATCGATCATAAGAGGAATCTGTAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGGATGGATAACACATCCCTtggattttcccctatatttccagacagcttttatcacgtaatccattacaagcccgctgccgcagagattcccgtggcgagcgataacccatcgcactatgcggatgccattcgt < 1:166076‑M1/251‑116 (MQ=255) cacaACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGCAATATCGAGCATAAGATGAATCTGGCGAGAATGGTCTGCTGCGACTCAGCCAACCTGCAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaac > 1:44645‑M1/1‑122 (MQ=255) ccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagacgatcacttatttaattgatagtggctgtctggagattcagggtgccagtctaACGCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTGTTCCTTTTATTGCCATTGCGGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATgg < 1:98642‑M2/142‑1 (MQ=255) aaGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCGGAAAGTATGGATAACACAACCCTtggattttcccctatattaccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgatagcccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgt < 1:172987‑M1/251‑156 (MQ=255) gttctccaatgacgagtctaaaaacgagtattaagactatcacttatttaagtgatattggttgtcgggagattcatggggccagtctaACCGGCAATGATGACTAATCATTGAGGAAATAGGATAAATGTTCAGACCTTTTTTAAAc < 1:225498‑M2/59‑1 (MQ=255) ncaatgannagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATg < 2:3435‑M2/13‑1 (MQ=255) taagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctcAACCTCAAGGATGACAAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTATCTTATGCTCGGCAGTTTGTTTTTTCCTTCTATTGCCATTGCTGGACGCACCGTGCACGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCCCCCGt > 1:243185‑M2/59‑248 (MQ=255) tGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagac < 1:232554‑M1/78‑55 (MQ=255) cagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGAt < 1:121138‑M2/130‑1 (MQ=255) | CCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGT > NC_000913/1105142‑1105565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |