| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 15 (1.480) | 12/298 | 0.0 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2666074 = | 0 (0.000) | coding (640/1281 nt) | csiE | stationary phase‑inducible protein CsiE | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 10 (0.990) | 9/296 | 0.1 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2666082 | 0 (0.000) | coding (648/1281 nt) | csiE | stationary phase‑inducible protein CsiE | |||||
CCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCA > NC_000913/2665844‑2666313 | cccGACGGCTGCAAAAACGCTTTGAATCGCGCGATAGTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGGACCACCTGATGAGCCACTGTTGATGGCACTTCTTTTTTCCggtgatgctg > 1:93964‑M2/1‑239 (MQ=255) atggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTNc < 1:199121‑M2/22‑1 (MQ=255) cccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgatgcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGGTTCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgac < 1:109199‑M2/54‑1 (MQ=255) gcagcaCCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGGCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtggatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccct > 1:136179‑M2/1‑166 (MQ=255) ngcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgac > 1:149436‑M2/141‑194 (MQ=255) gcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgaaaaagtaatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGCTCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAAc > 1:187034‑M2/122‑251 (MQ=255) gCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGAAGCTCCACCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaccttactgttttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaacgcactgccggacatc < 1:148224‑M2/251‑138 (MQ=255) cggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTtgn < 1:25865‑M2/16‑2 (MQ=255) ttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactagcaataagttggagtcattgccCTTTTTTCCATGTGGCGGTTTCCCGAGCCAGTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACg < 1:126298‑M2/80‑1 (MQ=255) naaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCAGGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGgac < 2:149436‑M2/54‑1 (MQ=255) caaaagcggtggagcagcatgacaaagtcagcgggtattatcagaacataaaaccctatcaataagttgtagtcattaccCTTTTTGCCATGGTGCGGGTTCCCGATCCATTGCGGGTTGCGCATCAGCGTGTCAGACGATTGCGTCAGTCTATCAAACGTCTGGTAAACCAGTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATAcc < 1:108138‑M2/156‑1 (MQ=255) gACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacgtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcccgcctgttc > 1:173818‑M2/1‑74 (MQ=255) gACGCCACNGNNNGNNTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGNACTACTTTTTTCCggngangctgncacnttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc < 2:173818‑M2/164‑91 (MQ=255) gacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGCTGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTta > 1:206541‑M2/61‑212 (MQ=255) catcgggcattatctgtacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCa > 1:10849‑M2/53‑96 (MQ=255) cagcggnnattatctgaccataaaacactatcaataagttggagtcattaccCTTTTTACCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCa < 2:10849‑M2/44‑1 (MQ=255) gcattatctgaacatacaacactatcaataagttggagtcattaccCTTTTTTCCCTGTTGCGGGATCCCGATCCATTGCGGACTGCGCATcagag > 1:189693‑M2/47‑94 (MQ=255) cTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttaccccgctcctc < 1:11826‑M2/251‑201 (MQ=255) ccaccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct > 1:210243‑M2/1‑39 (MQ=255) ccTGATGAGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcatctgtccttcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatcgctgctctcacggccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaac > 1:235740‑M2/1‑36 (MQ=255) tgatgaGCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccatcttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcactgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcac > 1:12433‑M2/1‑34 (MQ=255) gCCACTGTTTATGGCACTACTTTTTTCCggtgatgctgccaacgtactgatttagtgtatgatggtgtttgtgaggtg > 1:70212‑M2/1‑28 (MQ=255) gagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAANNGTCTGGNna > 2:20409‑M2/12‑99 (MQ=255) gagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCAGCAGCGGGACAGACAATTGCGGCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCa < 1:20409‑M2/240‑1 (MQ=255) taccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGAGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTc > 1:127334‑M2/5‑119 (MQ=255) | CCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGACTGTACCCA > NC_000913/2665844‑2666313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |