New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	279163 =	NA (NA)	11 (1.480)	7/316	0.1	91.7%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	2666074 =	1 (0.130)					coding (640/1281 nt)	csiE	stationary phase‑inducible protein CsiE

TCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGAC  >  NC_000913/2665836‑2666305                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        cgtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGt                                                                                                                                                                                                                             >  1:153516‑M2/239‑251 (MQ=255)      gCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTTTCTGCAATATTTTTTACTGCCGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTAAGGTAGCGCAGGGAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGATCCACTGTTTATGGCACTACTTTTTTccggtgatgct                                                                                                                                                                                                                        >  1:126892/1‑242 (MQ=255)                        gctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCgg                                                                                                                                                                                                      >  1:6144‑M2/216‑251 (MQ=255)                         ntggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCggg                                                                                                                                                                                                     >  1:104162‑M2/215‑251 (MQ=255)                                                                                              tgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGatn                                                                                                                                                                                                  <  1:41253‑M2/40‑2 (MQ=255)                                                                                                                               ngcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatagggcattatctgaacataaaacactataaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCCTTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTgg                                                                                                                                >  1:17783‑M2/113‑218 (MQ=255)                                                                                                                                          gacggaagtcgctgtcgttctcaaaatcggtggagcagcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATc                                                                                         >  1:141077‑M2/102‑246 (MQ=255)                                                                                                                                                                       gtggagcagcatgacaaagtcagcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAAc                                                                                                                                                <  1:4012‑M2/90‑1 (MQ=255)                                                                                                                                                                                                         tgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCgg                                                                                                                                                                                                      >  1:10427‑M2/39‑74 (MQ=255)                                                                                                                                                                                                         tgaacataaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCgg                                                                                                                                                                                                      <  2:10427‑M2/36‑1 (MQ=255)                                                                                                                                                                                                               taaaacactatcaataagttggagtcattaccCTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAg                                                                  <  1:65851‑M2/168‑1 (MQ=255)                                                                                                                                                                                                                            ataagttggagtcattaccCTTTTTTCCATGGTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTTGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAgan  <  1:30998‑M2/232‑2 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                        TCTCTGCTCCCGACGGCTGCAAAAACGCTTTGAATCGCGCGATATTCATTTCCTGTGTCTGTATCTGCAATATTGTTTGCTGCAGCACCACGCTGGAATTACGCCTCAGTTTAATCCGCTCCAACGTCGCTGGGCGGAATCCTGCCTTGAATTTCAGGTAGCGCAGGAAATTGGACGCCACTGGCAGCGTCGGGCGCTCCAGCCTGTACCACCTGATGAGCCACTGTTTATGGCACTACTTTTTTCCATGTTGCGGGTTCCCGATCCATTGCGGGATGCGCATCAGCGGGACAGACAATTGCGTCAGTCTATCAAACGTCTGGTAAACCATTTTCGTGAGCTGGGAAATGTTCGTTTTTATGATGAACAGGGGTTATGTGATCAGCTTTATACCCACCTCGCCCAGGCGTTAAATCGCAGTTTGTTTGCCATCGGTATTGATAATACCCTGCCGGAAGAGTTCGCCAGAC  >  NC_000913/2665836‑2666305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.