New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	279163 =	NA (NA)	11 (1.480)	7/316	0.1	91.7%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	2666074 =	1 (0.130)					coding (640/1281 nt)	csiE	stationary phase‑inducible protein CsiE

GGCAATCGCTACACCGTATTCGCCATCTTCCACGCGGTTGAGGATGTAAGCCGTCGCTACGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTAATGGCGCGCACAAAGCTGTAAATCAGCGCCGAGAGGATCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGG  >  NC_000913/278919‑279408                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                      ggCAATCGCTACACCGTATTCGCCATCTTCCACGCGGTTGAGGATGTAAGCCGTCGCTACGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTCATGGCGCGCACAAAGCTGTAAATCAGAGCCGAGAGGATCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATg                                                                                                                                                                                                                                                 >  1:159229/1‑251 (MQ=255)                                              gTAAGCCGTCGCTACGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTAATGGCGCGCACAAAGCTGTAAATCAGCGCCGAGAGGATCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATg                                                                                                                                                                                                    >  1:6357/1‑251 (MQ=255)                                                           aCGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTAATGGCGCGCACAAAGCTGTAAATCAGCGCCGAGAGGTTCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGACCCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAtgc                                                                                                                                                                                        <  1:141346/250‑1 (MQ=255)                                                           aCGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTAATGGCGCGCACAAAGCTGTAAATCAGCGCCGAGAGGATCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTGCATCGAGCGATTTATCGAGTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATTTTCAGATAATGCCCGATGACTTTGTCAtgcn                                                                                                                                                                                       <  1:19078/251‑2 (MQ=255)                                                                                                                                        cGAGAGGATCGCCGGGCGCAGCAGCTGCAGCAGGATGTGCGTAATGGGACGCAGGGAACCGGCGCGCATGCTGAGGCAGGTTTCATCGAGCTATTTATCGATGGTGCCCGGTAATGACTCCAACTTATTGAGAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAtgc                                                                                                                                                                                        <  1:88264/173‑1 (MQ=25)                                                                                                                                              gATCGCCGGGCGCAGCAGCGGCAGCAGGCTGTGCGTAATGGTCCGCCGGGACCCGGCGCGCAGACTGCGTGAGGCTTCATCCAGCGATTTATCGATTTGTCCCGGTACTGACTCCAACTTCTTGCTAGTGTTTTATGTTCCGATATTGCACGATGGCTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCg                                                                                                                                            >  1:98252/1‑211 (MQ=21)                                                                                                                                                     gggCGCAGCAGCGGCAGAAGCATGTGCGTCATGGTCCGCAGGGAACCGGCGCGCAGGATGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGAATCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGATAACGACAGCGACTTCCGTCCCAGCCGTGCCCGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCg                                                                                             >  1:55576/1‑251 (MQ=18)                                                                                                                                                                     gcagGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTAt                                                                                                               >  1:51621/1‑217 (MQ=255)                                                                                                                                                                              gCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACGCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCTTGCCATGtgct                                                                                                                                 <  1:143608/190‑1 (MQ=255)                                                                                                                                                                                         cGCAGGGAAACGGCGCGCAGGCTGAGTGAGGCTTCATAGAGCGATTTATCGATTTGCCCAGGTAATGACTCCAACTTATTGATAGTGTCTTCTATTCAGATAATGCCCGCTGCCTTTGTCATGCTGCTCCACCGAATTTGAAAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTc                                                          >  1:96845/1‑250 (MQ=17)                                                                                                                                                                                                                                   gATTTATCGATTTGGCCCGGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTg                                                                                                                                          >  1:48813/1‑128 (MQ=255)                                                                                                                                                                                                                                          cGATTTGGCCCGGTAATGACTCCAACTTATTGTTAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTGCCGGCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCTCTTTCTGATTACGTGCATCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTc        <  1:23916/251‑1 (MQ=255)                                                                                                                                                                                                                                          cGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTc        <  1:120703/251‑1 (MQ=34)                                                                                                                                                                                                                                                ggCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGACCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAggg  >  1:148889/1‑251 (MQ=14)                                                                                                                                                                                                                                                 gCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTc                                                          <  1:5818/194‑1 (MQ=32)                                                                                                                                                                                                                                                  cccGNTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTNTGTCATGCTNNTCNACCGANTNNNANNNCGNCAGCGACTTCCGTCCCAGCNGTNNCAGGTGNTGCCTCAGATTCAGGTTATGCCGCTc                                                                                                        <  2:36049/147‑1 (MQ=11)                                                                                                                                                                                                                                                  cccGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTc                                                                                                        >  1:36049/1‑147 (MQ=32)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                      GGCAATCGCTACACCGTATTCGCCATCTTCCACGCGGTTGAGGATGTAAGCCGTCGCTACGCGGGTATCCGGCGTGACGAGGAACACAATGGCGCTGACGGTGGTAATGGCGCGCACAAAGCTGTAAATCAGCGCCGAGAGGATCGCCGGGCGCAGCAGCGGCAGCAGGATGTGCGTAATGGTACGCAGGGAACCGGCGCGCAGGCTGAGTGAGGCTTCATCGAGCGATTTATCGATTTGGCCCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCTGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGG  >  NC_000913/278919‑279408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.