| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 568449 = | 0 (0.000) | 5 (0.670) | 5/316 | 0.2 | 100% | coding (135/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 568453 | 0 (0.000) | 11 (1.490) | 11/314 | 0.0 | 100% | coding (139/333 nt) | emrE | multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
ATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGC > NC_000913/568217‑568601 | atataAAAGAACATCAATGGGAACACAATGATGAAACAGGAGAGTTGAGCTCCAACTATAGTAACATTATCTCCAGTTTCAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccct > 1:90782‑M1/1‑237 (MQ=255) gAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGATCAAACTGTAGTAAACTTCTCTACAGTTTGAACAGGAAAGAATATACTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTCATGAAGTTTTCAGACGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttcc > 1:95517‑M1/1‑229 (MQ=255) cgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTg > 1:143907‑M1/202‑242 (MQ=255) ggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATc < 1:58200‑M1/52‑1 (MQ=255) gTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagc < 1:141904‑M1/251‑54 (MQ=255) gagttgagttCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTGCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcc < 1:93275‑M1/250‑55 (MQ=255) ctctgctgaacaattgcgctcttttcctgtgtggtacgacgtatgcgtttctccggccctcagacatccatcatctgttctccaatgactagtctaaacactagtattaagactatcacttatttaagtgatattggttgtctggagattaagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTAc < 1:28850‑M1/86‑1 (MQ=255) gAACAGGAAAGAATATGCTATGATCCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAGCCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATGATTTGTTATTGTGCATCATTCTGGTTATtggatgtgcccctatatttccagacatctgttatcactgaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccag < 1:75013‑M1/250‑93 (MQ=255) gAACAGGAAAGAATATGCTATGAAACCTTATGTTTATCTTGGTGGTGCAATACTTGCAGAGGGCATTGGTACAACCTTAATGAAGTTTTCAGAAGGATTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagc > 1:131413‑M1/1‑158 (MQ=255) ggAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGCGGTCATTGGTACAACATTCCTGAAGTTTTCAGATGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaccccattaccagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact > 1:78439‑M1/1‑153 (MQ=255) tGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGGACAACCTTAATGAAGTTTTCAGCAGGTTTTACACGGTTATGGCCCTCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgcgcgataacccagagcactatgcggatgc > 1:148894‑M1/1‑143 (MQ=255) tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGc > 1:142992‑M1/123‑228 (MQ=255) caatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGc > 1:99977‑M1/99‑251 (MQ=255) cATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATtggatttgcccc < 1:1441‑M1/57‑13 (MQ=255) cATCTGTTGGTACAATTATTTGTTATGGTGCATCATTCTGGTTATtggatttgcccc > 2:1441‑M1/1‑45 (MQ=255) gTTATTGTGCATCATTCTGGTTATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc > 1:142673‑M1/1‑24 (MQ=255) | ATATAAAAGAACATCAATGGGAACACAATGATGAAACAGGTGAGTTGAGTTCAAACTGTAGTACAATTCTCTCCAGTTTGAACAGGAAAGAATATGCTATGAACCCTTATATTTATCTTGGTGGTGCAATACTTGCAGAGGTCATTGGTACAACCTTAATGAAGTTTTCAGAAGGTTTTACACGGTTATGGCCATCTGTTGGTACAATTATTTGTTATTGTGCATCATTCTGGTTATTAGCTCAGACGCTGGCTTATATTCCTACAGGGATTGCTTATGCTATCTGGTCAGGAGTCGGTATTGTCCTGATTAGCTTACTGTCATGGGGATTTTTCGGCCAACGGCTGGACCTGCCAGCCATTATAGGCATGATGTTGATTTGTGC > NC_000913/568217‑568601 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |