mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 205 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 579,385 | 0 | A | G | 72.7% | 42.5 / 21.1 | 33 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 579,811 | 0 | C | T | 71.0% | 41.4 / 21.1 | 31 | intergenic (‑217/‑69) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,634,769 | 0 | T | A | 70.6% | 4.1 / 11.6 | 18 | P39P (CCA→CCT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,724 | 0 | G | A | 68.2% | 6.3 / 15.5 | 22 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,429,300 | 0 | T | G | 64.7% | 28.2 / 26.4 | 35 | G84G (GGT→GGG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,457 | 0 | A | G | 64.3% | 18.6 / 27.7 | 28 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,634,699 | 0 | A | C | 64.0% | 2.7 / 18.6 | 26 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,004 | 0 | C | T | 63.2% | 10.0 / 16.2 | 20 | intergenic (‑111/+180) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,291 | 0 | T | A | 62.5% | 35.5 / 30.6 | 32 | S81S (TCT→TCA) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,297 | 0 | C | G | 61.1% | 28.7 / 43.9 | 36 | P83P (CCC→CCG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,345 | 0 | T | G | 61.0% | 28.7 / 37.7 | 41 | R99R (CGT→CGG) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,717 | 0 | A | C | 60.9% | 28.1 / 16.2 | 23 | intergenic (‑123/‑163) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,429,319 | 0 | G | T | 60.0% | 27.5 / 44.9 | 40 | G91C (GGT→TGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 579,285 | 0 | T | C | 59.4% | 14.5 / 33.4 | 32 | I104V (ATT→GTT) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 581,042 | 0 | T | G | 59.4% | ‑5.8 / 35.1 | 32 | L70R (CTG→CGG) | nohD | putative DNA‑packaging protein NohD |
| * | NC_000913 | 579,502 | 0 | A | G | 59.1% | 3.7 / 22.0 | 22 | N31N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,429,353 | 0 | C | T | 59.0% | 15.1 / 44.4 | 39 | A102V (GCA→GTA) ‡ | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,354 | 0 | A | G | 59.0% | 17.3 / 44.1 | 39 | A102A (GCA→GCG) ‡ | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,360 | 0 | C | T | 59.0% | 21.3 / 42.2 | 39 | R104R (CGC→CGT) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 1,429,364 | 0 | T | C | 59.0% | 27.6 / 41.9 | 39 | F106L (TTT→CTT) | stfR | putative prophage side tail fiber protein StfR |