#=GENOME_DIFF	1.0
#=CREATED	12:53:19 19 Dec 2024
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20241218run12/IH194_S3_L001_R1R2_001 -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/raw_sequence_data/20241218run12/IH194_S3_L001_R1_001.fastq.gz /ld1/raw_sequence_data/20241218run12/IH194_S3_L001_R2_001.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH194_S3_L001_R1_001.fastq.gz
#=READSEQ	/ld1/raw_sequence_data/20241218run12/IH194_S3_L001_R2_001.fastq.gz
#=CONVERTED-BASES	110539320
#=CONVERTED-READS	449921
#=INPUT-BASES	110540622
#=INPUT-READS	449948
#=MAPPED-BASES	101354012
#=MAPPED-READS	414149
MOB	1	295,296	NC_000913	57276	IS2	1	5
SNP	2	48	NC_000913	71134	A
DEL	3	283,297	NC_000913	257908	776
SNP	4	49	NC_000913	557635	T
MOB	5	304,305	NC_000913	568449	IS2	-1	5
SNP	6	120	NC_000913	631633	A
SNP	7	121	NC_000913	987152	T
MOB	8	301,306	NC_000913	1105376	IS2	-1	5
SNP	9	122	NC_000913	1196220	T
SNP	10	123	NC_000913	1290881	T
DEL	11	287,307	NC_000913	1294035	141
DEL	12	288,308	NC_000913	1299499	1199
DEL	13	309	NC_000913	1303073	12
SNP	14	124	NC_000913	1337394	G
SNP	15	125	NC_000913	1353758	A
DEL	16	243	NC_000913	1494388	1
SNP	17	244	NC_000913	1517508	T
SNP	18	245	NC_000913	1576911	A
SNP	19	263	NC_000913	1652331	C
DEL	20	264	NC_000913	1667887	1
DEL	21	265	NC_000913	1744751	1
MOB	22	311,312	NC_000913	1792772	IS2	-1	5
SNP	23	266	NC_000913	1978243	T
SNP	24	267	NC_000913	2003264	T
SNP	25	268	NC_000913	2032423	A
DEL	26	269,270	NC_000913	2173363	2
SNP	27	271	NC_000913	2242121	G
MOB	28	317,318	NC_000913	2269876	IS5	1	4
MOB	29	316,321	NC_000913	2319850	IS2	1	5
SNP	30	272	NC_000913	2397444	A
MOB	31	313,314	NC_000913	2406780	IS1	-1	8
DEL	32	291,322	NC_000913	2558699	6790
MOB	33	298,299	NC_000913	2666074	IS1	1	9
SNP	34	273	NC_000913	2820156	G
MOB	35	323,324	NC_000913	3264817	IS2	1	5
SNP	36	274	NC_000913	3268970	G
SNP	37	275	NC_000913	3339943	G
SNP	38	276	NC_000913	3486205	A
INS	39	277	NC_000913	3560455	G
DEL	40	293,326	NC_000913	3682261	34
MOB	41	325,327	NC_000913	3737137	IS2	1	5
MOB	42	328,329	NC_000913	4123923	IS2	-1	5
MOB	43	330,331	NC_000913	4135180	IS2	-1	5
INS	44	278	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
INS	45	279,280	NC_000913	4296381	GC
MOB	46	319,320	NC_000913	4536236	IS5	1	4
SNP	47	282	NC_000913	4543024	G
RA	48	.	NC_000913	71134	0	G	A	consensus_score=52.2	frequency=1	major_base=A	major_cov=10/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/6
RA	49	.	NC_000913	557635	0	A	T	consensus_score=36.3	frequency=1	major_base=T	major_cov=7/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/7
RA	50	.	NC_000913	566173	0	C	G	bias_e_value=1596500	bias_p_value=0.343951	consensus_reject=FREQUENCY_CUTOFF	consensus_score=61.2	fisher_strand_p_value=0.654589	frequency=2.143e-01	ks_quality_p_value=0.16197	major_base=C	major_cov=11/11	major_frequency=7.857e-01	minor_base=G	minor_cov=2/4	new_cov=2/4	polymorphism_frequency=2.143e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=11/11	total_cov=13/16
RA	51	.	NC_000913	566205	0	T	C	bias_e_value=525686	bias_p_value=0.113254	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.6	fisher_strand_p_value=0.214759	frequency=2.414e-01	ks_quality_p_value=0.11143	major_base=T	major_cov=13/9	major_frequency=7.586e-01	minor_base=C	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.414e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=13/9	total_cov=15/14
RA	52	.	NC_000913	566245	0	G	A	bias_e_value=2157800	bias_p_value=0.464877	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.1	fisher_strand_p_value=0.389169	frequency=3.200e-01	ks_quality_p_value=0.427666	major_base=G	major_cov=11/6	major_frequency=6.800e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.200e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=11/6	total_cov=14/11
RA	53	.	NC_000913	566277	0	C	T	bias_e_value=1213860	bias_p_value=0.261515	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.8	fisher_strand_p_value=0.190435	frequency=2.692e-01	ks_quality_p_value=0.378235	major_base=C	major_cov=12/7	major_frequency=7.308e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.692e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=12/7	total_cov=14/12
RA	54	.	NC_000913	566435	0	G	A	bias_e_value=2887860	bias_p_value=0.622161	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.672769	frequency=2.800e-01	ks_quality_p_value=0.399786	major_base=G	major_cov=10/8	major_frequency=7.200e-01	minor_base=A	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.800e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=10/8	total_cov=13/12
RA	55	.	NC_000913	566444	0	T	C	bias_e_value=4470210	bias_p_value=0.963064	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.0	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.740818	major_base=T	major_cov=11/9	major_frequency=6.667e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=3.333e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=11/9	total_cov=16/14
RA	56	.	NC_000913	566451	0	T	C	bias_e_value=4105040	bias_p_value=0.884392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=24.1	fisher_strand_p_value=1	frequency=3.448e-01	ks_quality_p_value=0.559472	major_base=T	major_cov=10/9	major_frequency=6.552e-01	minor_base=C	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=3.448e-01	polymorphism_score=26.2	prediction=polymorphism	ref_cov=10/9	total_cov=16/14
RA	57	.	NC_000913	566463	0	T	C	bias_e_value=4636800	bias_p_value=0.998954	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.3	fisher_strand_p_value=1	frequency=4.412e-01	ks_quality_p_value=0.954622	major_base=T	major_cov=10/9	major_frequency=5.588e-01	minor_base=C	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=4.412e-01	polymorphism_score=36.7	prediction=polymorphism	ref_cov=10/9	total_cov=18/16
RA	58	.	NC_000913	566468	0	C	T	bias_e_value=4641600	bias_p_value=0.999989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.5	fisher_strand_p_value=1	frequency=4.286e-01	ks_quality_p_value=0.995249	major_base=C	major_cov=10/10	major_frequency=5.714e-01	minor_base=T	minor_cov=8/7	new_cov=8/7	polymorphism_frequency=4.286e-01	polymorphism_score=39.9	prediction=polymorphism	ref_cov=10/10	total_cov=18/17
RA	59	.	NC_000913	566492	0	G	T	bias_e_value=1646900	bias_p_value=0.354809	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.1	fisher_strand_p_value=0.738795	frequency=5.278e-01	ks_quality_p_value=0.150125	major_base=T	major_cov=11/8	major_frequency=5.278e-01	minor_base=G	minor_cov=8/9	new_cov=11/8	polymorphism_frequency=5.278e-01	polymorphism_score=54.6	prediction=polymorphism	ref_cov=8/9	total_cov=19/17
RA	60	.	NC_000913	566493	0	G	A	bias_e_value=1729490	bias_p_value=0.372602	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.738795	frequency=5.278e-01	ks_quality_p_value=0.161261	major_base=A	major_cov=11/8	major_frequency=5.278e-01	minor_base=G	minor_cov=8/9	new_cov=11/8	polymorphism_frequency=5.278e-01	polymorphism_score=45.6	prediction=polymorphism	ref_cov=8/9	total_cov=19/17
RA	61	.	NC_000913	566498	0	C	T	bias_e_value=3822360	bias_p_value=0.823491	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.505085	frequency=5.278e-01	ks_quality_p_value=0.926954	major_base=T	major_cov=11/8	major_frequency=5.278e-01	minor_base=C	minor_cov=7/10	new_cov=11/8	polymorphism_frequency=5.278e-01	polymorphism_score=49.1	prediction=polymorphism	ref_cov=7/10	total_cov=18/18
RA	62	.	NC_000913	566510	0	G	C	bias_e_value=3701220	bias_p_value=0.797394	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.7	fisher_strand_p_value=0.517124	frequency=5.135e-01	ks_quality_p_value=0.841879	major_base=C	major_cov=11/8	major_frequency=5.135e-01	minor_base=G	minor_cov=8/10	new_cov=11/8	polymorphism_frequency=5.135e-01	polymorphism_score=63.6	prediction=polymorphism	ref_cov=8/10	total_cov=19/18
RA	63	.	NC_000913	566513	0	C	T	bias_e_value=2368350	bias_p_value=0.510239	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.9	fisher_strand_p_value=0.517124	frequency=5.135e-01	ks_quality_p_value=0.372914	major_base=T	major_cov=11/8	major_frequency=5.135e-01	minor_base=C	minor_cov=8/10	new_cov=11/8	polymorphism_frequency=5.135e-01	polymorphism_score=54.2	prediction=polymorphism	ref_cov=8/10	total_cov=19/18
RA	64	.	NC_000913	566519	0	T	C	bias_e_value=3836810	bias_p_value=0.826605	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.7	fisher_strand_p_value=0.738795	frequency=5.278e-01	ks_quality_p_value=0.639308	major_base=C	major_cov=11/8	major_frequency=5.278e-01	minor_base=T	minor_cov=8/9	new_cov=11/8	polymorphism_frequency=5.278e-01	polymorphism_score=53.0	prediction=polymorphism	ref_cov=8/9	total_cov=19/17
RA	65	.	NC_000913	566522	0	C	A	bias_e_value=2652960	bias_p_value=0.571554	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.7	fisher_strand_p_value=0.738795	frequency=5.278e-01	ks_quality_p_value=0.314579	major_base=A	major_cov=11/8	major_frequency=5.278e-01	minor_base=C	minor_cov=8/9	new_cov=11/8	polymorphism_frequency=5.278e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=8/9	total_cov=19/17
RA	66	.	NC_000913	566528	0	A	G	bias_e_value=3627130	bias_p_value=0.781431	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.8	fisher_strand_p_value=0.505085	frequency=5.429e-01	ks_quality_p_value=0.82491	major_base=G	major_cov=11/8	major_frequency=5.429e-01	minor_base=A	minor_cov=7/9	new_cov=11/8	polymorphism_frequency=5.429e-01	polymorphism_score=44.7	prediction=polymorphism	ref_cov=7/9	total_cov=19/17
RA	67	.	NC_000913	566530	1	.	T	bias_e_value=3983250	bias_p_value=0.858153	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.7	fisher_strand_p_value=0.517124	frequency=5.135e-01	ks_quality_p_value=1	major_base=T	major_cov=11/8	major_frequency=5.135e-01	minor_base=.	minor_cov=8/10	new_cov=11/8	polymorphism_frequency=5.135e-01	polymorphism_score=70.1	prediction=polymorphism	ref_cov=8/10	total_cov=19/18
RA	68	.	NC_000913	566532	0	A	T	bias_e_value=1282730	bias_p_value=0.276353	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.517124	frequency=5.000e-01	ks_quality_p_value=0.150358	major_base=A	major_cov=8/11	major_frequency=5.000e-01	minor_base=T	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=5.000e-01	polymorphism_score=57.5	prediction=polymorphism	ref_cov=8/11	total_cov=19/19
RA	69	.	NC_000913	566535	0	T	.	bias_e_value=1915810	bias_p_value=0.412743	consensus_reject=FREQUENCY_CUTOFF	consensus_score=63.2	fisher_strand_p_value=0.517124	frequency=5.000e-01	ks_quality_p_value=0.268262	major_base=T	major_cov=8/11	major_frequency=5.000e-01	minor_base=.	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=5.000e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=8/11	total_cov=19/19
RA	70	.	NC_000913	566536	0	G	A	bias_e_value=1282730	bias_p_value=0.276353	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.2	fisher_strand_p_value=0.517124	frequency=5.000e-01	ks_quality_p_value=0.150358	major_base=G	major_cov=8/11	major_frequency=5.000e-01	minor_base=A	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=5.000e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=8/11	total_cov=19/19
RA	71	.	NC_000913	566543	0	A	T	bias_e_value=3983250	bias_p_value=0.858153	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.2	fisher_strand_p_value=0.517124	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=11/8	major_frequency=5.000e-01	minor_base=A	minor_cov=8/11	new_cov=11/8	polymorphism_frequency=5.000e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=8/11	total_cov=19/19
RA	72	.	NC_000913	566547	0	C	A	bias_e_value=200132	bias_p_value=0.0431165	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.5	fisher_strand_p_value=0.517124	frequency=5.000e-01	ks_quality_p_value=0.0140778	major_base=C	major_cov=8/11	major_frequency=5.000e-01	minor_base=A	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=5.000e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=8/11	total_cov=19/19
RA	73	.	NC_000913	566565	0	A	G	bias_e_value=3228140	bias_p_value=0.695473	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.1	fisher_strand_p_value=0.556717	frequency=5.682e-01	ks_quality_p_value=0.592136	major_base=G	major_cov=13/12	major_frequency=5.682e-01	minor_base=A	minor_cov=8/11	new_cov=13/12	polymorphism_frequency=5.682e-01	polymorphism_score=55.5	prediction=polymorphism	ref_cov=8/11	total_cov=21/23
RA	74	.	NC_000913	566570	0	A	C	bias_e_value=4044680	bias_p_value=0.871389	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.556717	frequency=5.682e-01	ks_quality_p_value=0.966044	major_base=C	major_cov=13/12	major_frequency=5.682e-01	minor_base=A	minor_cov=8/11	new_cov=13/12	polymorphism_frequency=5.682e-01	polymorphism_score=48.4	prediction=polymorphism	ref_cov=8/11	total_cov=21/23
RA	75	.	NC_000913	566597	0	T	C	bias_e_value=1278930	bias_p_value=0.275534	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.2	fisher_strand_p_value=0.24866	frequency=5.625e-01	ks_quality_p_value=0.311403	major_base=C	major_cov=14/13	major_frequency=5.625e-01	minor_base=T	minor_cov=7/14	new_cov=14/13	polymorphism_frequency=5.625e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=7/14	total_cov=21/27
RA	76	.	NC_000913	566651	0	T	C	bias_e_value=553484	bias_p_value=0.119243	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.2	fisher_strand_p_value=0.565123	frequency=5.833e-01	ks_quality_p_value=0.0452104	major_base=C	major_cov=14/14	major_frequency=5.833e-01	minor_base=T	minor_cov=8/12	new_cov=14/14	polymorphism_frequency=5.833e-01	polymorphism_score=56.1	prediction=polymorphism	ref_cov=8/12	total_cov=22/26
RA	77	.	NC_000913	566728	0	G	T	bias_e_value=4606700	bias_p_value=0.99247	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.8	fisher_strand_p_value=1	frequency=3.571e-01	ks_quality_p_value=0.879816	major_base=G	major_cov=12/15	major_frequency=6.429e-01	minor_base=T	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=3.571e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=12/15	total_cov=18/24
RA	78	.	NC_000913	566740	0	A	G	bias_e_value=3925030	bias_p_value=0.84561	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.4	fisher_strand_p_value=0.498613	frequency=3.171e-01	ks_quality_p_value=1	major_base=A	major_cov=13/15	major_frequency=6.829e-01	minor_base=G	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.171e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=13/15	total_cov=17/24
RA	79	.	NC_000913	566742	0	A	C	bias_e_value=3798830	bias_p_value=0.818422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.5	fisher_strand_p_value=0.498613	frequency=3.171e-01	ks_quality_p_value=0.925713	major_base=A	major_cov=13/15	major_frequency=6.829e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.171e-01	polymorphism_score=28.2	prediction=polymorphism	ref_cov=13/15	total_cov=17/24
RA	80	.	NC_000913	566756	0	G	C	bias_e_value=2956940	bias_p_value=0.637046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=49.2	fisher_strand_p_value=0.502699	frequency=3.250e-01	ks_quality_p_value=0.557956	major_base=G	major_cov=12/15	major_frequency=6.750e-01	minor_base=C	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.250e-01	polymorphism_score=43.1	prediction=polymorphism	ref_cov=12/15	total_cov=16/25
RA	81	.	NC_000913	566770	0	C	A	bias_e_value=1806650	bias_p_value=0.389226	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.4	fisher_strand_p_value=0.498613	frequency=3.171e-01	ks_quality_p_value=0.254855	major_base=C	major_cov=13/15	major_frequency=6.829e-01	minor_base=A	minor_cov=4/9	new_cov=4/9	polymorphism_frequency=3.171e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=13/15	total_cov=17/25
RA	82	.	NC_000913	568052	0	T	C	bias_e_value=3840790	bias_p_value=0.827461	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.3	fisher_strand_p_value=0.716047	frequency=2.778e-01	ks_quality_p_value=0.661216	major_base=T	major_cov=10/16	major_frequency=7.222e-01	minor_base=C	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.778e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=10/16	total_cov=13/23
RA	83	.	NC_000913	578331	0	G	T	bias_e_value=4636550	bias_p_value=0.9989	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.7	fisher_strand_p_value=1	frequency=3.200e-01	ks_quality_p_value=0.95347	major_base=G	major_cov=10/7	major_frequency=6.800e-01	minor_base=T	minor_cov=5/3	new_cov=5/3	polymorphism_frequency=3.200e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=10/7	total_cov=15/10
RA	84	.	NC_000913	578427	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=7.6	fisher_strand_p_value=1	frequency=4.615e-01	ks_quality_p_value=1	major_base=G	major_cov=8/6	major_frequency=5.385e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=4.615e-01	polymorphism_score=36.4	prediction=polymorphism	ref_cov=8/6	total_cov=14/14
RA	85	.	NC_000913	578571	0	C	T	bias_e_value=2912310	bias_p_value=0.627429	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=9.8	fisher_strand_p_value=0.692449	frequency=3.846e-01	ks_quality_p_value=0.39425	major_base=C	major_cov=5/11	major_frequency=6.154e-01	minor_base=T	minor_cov=4/6	new_cov=4/6	polymorphism_frequency=3.846e-01	polymorphism_score=25.9	prediction=polymorphism	ref_cov=5/11	total_cov=9/17
RA	86	.	NC_000913	578574	0	A	C	bias_e_value=4501450	bias_p_value=0.969794	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=1	frequency=4.231e-01	ks_quality_p_value=0.764501	major_base=A	major_cov=5/10	major_frequency=5.769e-01	minor_base=C	minor_cov=4/7	new_cov=4/7	polymorphism_frequency=4.231e-01	polymorphism_score=24.7	prediction=polymorphism	ref_cov=5/10	total_cov=9/17
RA	87	.	NC_000913	578605	0	T	G	bias_e_value=4612310	bias_p_value=0.993679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.1	fisher_strand_p_value=1	frequency=3.636e-01	ks_quality_p_value=0.889689	major_base=T	major_cov=4/10	major_frequency=6.364e-01	minor_base=G	minor_cov=2/6	new_cov=2/6	polymorphism_frequency=3.636e-01	polymorphism_score=19.2	prediction=polymorphism	ref_cov=4/10	total_cov=6/16
RA	88	.	NC_000913	578729	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.5	fisher_strand_p_value=1	frequency=3.077e-01	ks_quality_p_value=1	major_base=A	major_cov=8/10	major_frequency=6.923e-01	minor_base=G	minor_cov=4/4	new_cov=4/4	polymorphism_frequency=3.077e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=8/10	total_cov=12/14
RA	89	.	NC_000913	578809	0	T	C	bias_e_value=4592940	bias_p_value=0.989505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.9	fisher_strand_p_value=1	frequency=2.857e-01	ks_quality_p_value=0.858661	major_base=T	major_cov=7/8	major_frequency=7.143e-01	minor_base=C	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=2.857e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=7/8	total_cov=10/11
RA	90	.	NC_000913	578831	0	T	C	bias_e_value=4639070	bias_p_value=0.999444	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.7	fisher_strand_p_value=1	frequency=3.158e-01	ks_quality_p_value=0.966825	major_base=T	major_cov=6/7	major_frequency=6.842e-01	minor_base=C	minor_cov=3/3	new_cov=3/3	polymorphism_frequency=3.158e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=6/7	total_cov=9/10
RA	91	.	NC_000913	579004	0	C	T	bias_e_value=1585450	bias_p_value=0.34157	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.0	fisher_strand_p_value=0.173275	frequency=6.316e-01	ks_quality_p_value=0.605771	major_base=T	major_cov=6/6	major_frequency=6.316e-01	minor_base=C	minor_cov=1/6	new_cov=6/6	polymorphism_frequency=6.316e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=1/6	total_cov=8/12
RA	92	.	NC_000913	579099	0	A	.	bias_e_value=1830830	bias_p_value=0.394434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.9	fisher_strand_p_value=0.70508	frequency=5.357e-01	ks_quality_p_value=0.183825	major_base=.	major_cov=9/6	major_frequency=5.357e-01	minor_base=A	minor_cov=6/7	new_cov=9/6	polymorphism_frequency=5.357e-01	polymorphism_score=62.7	prediction=polymorphism	ref_cov=6/7	total_cov=15/13
RA	93	.	NC_000913	579127	0	T	C	bias_e_value=2168120	bias_p_value=0.467101	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.0	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.167677	major_base=C	major_cov=8/6	major_frequency=5.000e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=5.000e-01	polymorphism_score=35.6	prediction=polymorphism	ref_cov=8/6	total_cov=16/12
RA	94	.	NC_000913	579134	0	T	C	bias_e_value=4630360	bias_p_value=0.997567	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.8	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.931063	major_base=C	major_cov=8/6	major_frequency=5.000e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=5.000e-01	polymorphism_score=35.5	prediction=polymorphism	ref_cov=8/6	total_cov=16/12
RA	95	.	NC_000913	579146	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.1	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=8/6	major_frequency=5.000e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=5.000e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=8/6	total_cov=16/12
RA	96	.	NC_000913	579271	0	G	A	bias_e_value=4037180	bias_p_value=0.869772	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.1	fisher_strand_p_value=1	frequency=5.862e-01	ks_quality_p_value=0.535216	major_base=A	major_cov=11/6	major_frequency=5.862e-01	minor_base=G	minor_cov=7/5	new_cov=11/6	polymorphism_frequency=5.862e-01	polymorphism_score=32.1	prediction=polymorphism	ref_cov=7/5	total_cov=18/11
RA	97	.	NC_000913	579285	0	T	C	bias_e_value=3461800	bias_p_value=0.745811	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.5	fisher_strand_p_value=1	frequency=5.938e-01	ks_quality_p_value=0.378071	major_base=C	major_cov=12/7	major_frequency=5.938e-01	minor_base=T	minor_cov=8/5	new_cov=12/7	polymorphism_frequency=5.938e-01	polymorphism_score=33.4	prediction=polymorphism	ref_cov=8/5	total_cov=20/12
RA	98	.	NC_000913	579385	0	A	G	bias_e_value=3565850	bias_p_value=0.768229	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=1	frequency=7.273e-01	ks_quality_p_value=0.401874	major_base=G	major_cov=16/8	major_frequency=7.273e-01	minor_base=A	minor_cov=6/3	new_cov=16/8	polymorphism_frequency=7.273e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=6/3	total_cov=22/11
RA	99	.	NC_000913	579457	0	A	G	bias_e_value=1264850	bias_p_value=0.2725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=0.242541	frequency=6.429e-01	ks_quality_p_value=0.314383	major_base=G	major_cov=12/6	major_frequency=6.429e-01	minor_base=A	minor_cov=4/6	new_cov=12/6	polymorphism_frequency=6.429e-01	polymorphism_score=27.7	prediction=polymorphism	ref_cov=4/6	total_cov=16/12
RA	100	.	NC_000913	579502	0	A	G	bias_e_value=937758	bias_p_value=0.202031	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.414861	frequency=5.909e-01	ks_quality_p_value=0.122333	major_base=G	major_cov=7/6	major_frequency=5.909e-01	minor_base=A	minor_cov=3/6	new_cov=7/6	polymorphism_frequency=5.909e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=3/6	total_cov=10/12
RA	101	.	NC_000913	579540	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=4/7	major_frequency=5.000e-01	minor_base=C	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=5.000e-01	polymorphism_score=26.5	prediction=polymorphism	ref_cov=4/7	total_cov=9/13
RA	102	.	NC_000913	579651	0	C	T	bias_e_value=551913	bias_p_value=0.118905	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.675175	frequency=4.583e-01	ks_quality_p_value=0.0377046	major_base=C	major_cov=4/9	major_frequency=5.417e-01	minor_base=T	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=4.583e-01	polymorphism_score=32.7	prediction=polymorphism	ref_cov=4/9	total_cov=9/15
RA	103	.	NC_000913	579671	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=1	major_base=C	major_cov=5/7	major_frequency=5.000e-01	minor_base=T	minor_cov=4/8	new_cov=5/7	polymorphism_frequency=5.000e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=4/8	total_cov=9/15
RA	104	.	NC_000913	579717	0	A	C	bias_e_value=3482270	bias_p_value=0.750223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.1	fisher_strand_p_value=0.382636	frequency=6.087e-01	ks_quality_p_value=1	major_base=C	major_cov=4/10	major_frequency=6.087e-01	minor_base=A	minor_cov=5/4	new_cov=4/10	polymorphism_frequency=6.087e-01	polymorphism_score=16.2	prediction=polymorphism	ref_cov=5/4	total_cov=9/14
RA	105	.	NC_000913	579811	0	C	T	bias_e_value=3450710	bias_p_value=0.743423	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.4	fisher_strand_p_value=0.417449	frequency=7.097e-01	ks_quality_p_value=0.89981	major_base=T	major_cov=6/16	major_frequency=7.097e-01	minor_base=C	minor_cov=4/5	new_cov=6/16	polymorphism_frequency=7.097e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=4/5	total_cov=10/21
RA	106	.	NC_000913	580020	0	G	A	bias_e_value=4073090	bias_p_value=0.877509	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.5	fisher_strand_p_value=0.715249	frequency=5.000e-01	ks_quality_p_value=0.765928	major_base=G	major_cov=8/7	major_frequency=5.000e-01	minor_base=A	minor_cov=6/9	new_cov=6/9	polymorphism_frequency=5.000e-01	polymorphism_score=41.1	prediction=polymorphism	ref_cov=8/7	total_cov=14/16
RA	107	.	NC_000913	580115	0	C	T	bias_e_value=3850070	bias_p_value=0.829462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.1	fisher_strand_p_value=1	frequency=3.478e-01	ks_quality_p_value=0.476147	major_base=C	major_cov=10/5	major_frequency=6.522e-01	minor_base=T	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=3.478e-01	polymorphism_score=21.0	prediction=polymorphism	ref_cov=10/5	total_cov=16/7
RA	108	.	NC_000913	580119	0	A	G	bias_e_value=4532090	bias_p_value=0.976395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.6	fisher_strand_p_value=1	frequency=3.478e-01	ks_quality_p_value=0.790743	major_base=A	major_cov=10/5	major_frequency=6.522e-01	minor_base=G	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=3.478e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=10/5	total_cov=16/7
RA	109	.	NC_000913	580120	0	C	T	bias_e_value=4532090	bias_p_value=0.976395	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.0	fisher_strand_p_value=1	frequency=3.478e-01	ks_quality_p_value=0.790743	major_base=C	major_cov=10/5	major_frequency=6.522e-01	minor_base=T	minor_cov=6/2	new_cov=6/2	polymorphism_frequency=3.478e-01	polymorphism_score=20.6	prediction=polymorphism	ref_cov=10/5	total_cov=16/7
RA	110	.	NC_000913	580302	0	C	T	bias_e_value=4424880	bias_p_value=0.953299	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=0.710382	frequency=5.172e-01	ks_quality_p_value=1	major_base=T	major_cov=10/5	major_frequency=5.172e-01	minor_base=C	minor_cov=8/6	new_cov=10/5	polymorphism_frequency=5.172e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=8/6	total_cov=18/11
RA	111	.	NC_000913	580830	0	T	A	bias_e_value=2978730	bias_p_value=0.64174	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.7	fisher_strand_p_value=0.692449	frequency=4.074e-01	ks_quality_p_value=0.410421	major_base=T	major_cov=10/6	major_frequency=5.926e-01	minor_base=A	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=4.074e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=10/6	total_cov=18/9
RA	112	.	NC_000913	580831	0	G	A	bias_e_value=3883650	bias_p_value=0.836696	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.7	fisher_strand_p_value=0.692449	frequency=4.074e-01	ks_quality_p_value=0.701906	major_base=G	major_cov=10/6	major_frequency=5.926e-01	minor_base=A	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=4.074e-01	polymorphism_score=27.1	prediction=polymorphism	ref_cov=10/6	total_cov=18/9
RA	113	.	NC_000913	581042	0	T	G	bias_e_value=2651160	bias_p_value=0.571167	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-5.8	fisher_strand_p_value=0.472548	frequency=5.938e-01	ks_quality_p_value=0.491261	major_base=G	major_cov=11/8	major_frequency=5.938e-01	minor_base=T	minor_cov=5/8	new_cov=11/8	polymorphism_frequency=5.938e-01	polymorphism_score=35.1	prediction=polymorphism	ref_cov=5/8	total_cov=16/16
RA	114	.	NC_000913	581056	0	A	G	bias_e_value=2255590	bias_p_value=0.485945	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.490529	frequency=5.588e-01	ks_quality_p_value=0.363727	major_base=G	major_cov=11/8	major_frequency=5.588e-01	minor_base=A	minor_cov=6/9	new_cov=11/8	polymorphism_frequency=5.588e-01	polymorphism_score=42.9	prediction=polymorphism	ref_cov=6/9	total_cov=17/17
RA	115	.	NC_000913	581073	0	G	A	bias_e_value=2478770	bias_p_value=0.534027	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.6	fisher_strand_p_value=0.343067	frequency=4.872e-01	ks_quality_p_value=0.605222	major_base=G	major_cov=8/12	major_frequency=5.128e-01	minor_base=A	minor_cov=11/8	new_cov=11/8	polymorphism_frequency=4.872e-01	polymorphism_score=50.1	prediction=polymorphism	ref_cov=8/12	total_cov=19/20
RA	116	.	NC_000913	581118	0	T	C	bias_e_value=3677900	bias_p_value=0.792368	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.8	fisher_strand_p_value=0.488676	frequency=3.429e-01	ks_quality_p_value=0.878623	major_base=T	major_cov=10/13	major_frequency=6.571e-01	minor_base=C	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=3.429e-01	polymorphism_score=29.0	prediction=polymorphism	ref_cov=10/13	total_cov=17/18
RA	117	.	NC_000913	581127	0	G	A	bias_e_value=3861870	bias_p_value=0.832003	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.6	fisher_strand_p_value=0.495055	frequency=3.421e-01	ks_quality_p_value=0.968758	major_base=G	major_cov=11/14	major_frequency=6.579e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.421e-01	polymorphism_score=31.7	prediction=polymorphism	ref_cov=11/14	total_cov=19/19
RA	118	.	NC_000913	581133	0	A	G	bias_e_value=3913470	bias_p_value=0.843121	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.3	fisher_strand_p_value=0.495055	frequency=3.421e-01	ks_quality_p_value=1	major_base=A	major_cov=11/14	major_frequency=6.579e-01	minor_base=G	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.421e-01	polymorphism_score=30.2	prediction=polymorphism	ref_cov=11/14	total_cov=19/19
RA	119	.	NC_000913	581227	0	A	C	bias_e_value=4583360	bias_p_value=0.987441	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.7	fisher_strand_p_value=1	frequency=2.778e-01	ks_quality_p_value=0.845759	major_base=A	major_cov=12/14	major_frequency=7.222e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.778e-01	polymorphism_score=20.2	prediction=polymorphism	ref_cov=12/14	total_cov=17/19
RA	120	.	NC_000913	631633	0	G	A	consensus_score=83.9	frequency=1	major_base=A	major_cov=15/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/14
RA	121	.	NC_000913	987152	0	G	T	consensus_score=73.6	frequency=1	major_base=T	major_cov=15/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/6
RA	122	.	NC_000913	1196220	0	C	T	consensus_score=10.2	frequency=1	major_base=T	major_cov=2/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/4
RA	123	.	NC_000913	1290881	0	C	T	consensus_score=33.9	frequency=1	major_base=T	major_cov=6/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/6
RA	124	.	NC_000913	1337394	0	A	G	consensus_score=80.6	frequency=1	major_base=G	major_cov=11/12	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/12	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/12
RA	125	.	NC_000913	1353758	0	T	A	bias_e_value=4641650	bias_p_value=1	consensus_score=43.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/6	major_frequency=8.889e-01	minor_base=C	minor_cov=1/1	new_cov=10/6	polymorphism_frequency=8.889e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/7
RA	126	.	NC_000913	1423244	0	G	C	bias_e_value=4640740	bias_p_value=0.999803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.9	fisher_strand_p_value=1	frequency=2.000e-01	ks_quality_p_value=0.980199	major_base=G	major_cov=9/11	major_frequency=8.000e-01	minor_base=C	minor_cov=2/3	new_cov=2/3	polymorphism_frequency=2.000e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=9/11	total_cov=11/14
RA	127	.	NC_000913	1423272	0	C	T	bias_e_value=4235320	bias_p_value=0.91246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.1	fisher_strand_p_value=0.68599	frequency=2.857e-01	ks_quality_p_value=0.892003	major_base=C	major_cov=10/10	major_frequency=7.143e-01	minor_base=T	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.857e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=10/10	total_cov=13/15
RA	128	.	NC_000913	1423273	0	G	A	bias_e_value=4375580	bias_p_value=0.942677	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.6	fisher_strand_p_value=0.68599	frequency=2.857e-01	ks_quality_p_value=0.992883	major_base=G	major_cov=10/10	major_frequency=7.143e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.857e-01	polymorphism_score=15.4	prediction=polymorphism	ref_cov=10/10	total_cov=13/15
RA	129	.	NC_000913	1423283	0	A	C	bias_e_value=4400790	bias_p_value=0.948108	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.8	fisher_strand_p_value=0.695652	frequency=2.963e-01	ks_quality_p_value=1	major_base=A	major_cov=9/10	major_frequency=7.037e-01	minor_base=C	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=2.963e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=9/10	total_cov=12/15
RA	130	.	NC_000913	1423284	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.5	fisher_strand_p_value=1	frequency=2.692e-01	ks_quality_p_value=1	major_base=A	major_cov=9/10	major_frequency=7.308e-01	minor_base=C	minor_cov=3/4	new_cov=3/4	polymorphism_frequency=2.692e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=9/10	total_cov=12/15
RA	131	.	NC_000913	1423338	0	G	C	bias_e_value=2375510	bias_p_value=0.511781	consensus_reject=FREQUENCY_CUTOFF	consensus_score=74.7	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.193781	major_base=G	major_cov=12/14	major_frequency=6.667e-01	minor_base=C	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=3.333e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=12/14	total_cov=18/21
RA	132	.	NC_000913	1423404	0	G	T	bias_e_value=1304870	bias_p_value=0.281123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.9	fisher_strand_p_value=1	frequency=4.062e-01	ks_quality_p_value=0.07963	major_base=G	major_cov=8/11	major_frequency=5.938e-01	minor_base=T	minor_cov=6/7	new_cov=6/7	polymorphism_frequency=4.062e-01	polymorphism_score=32.0	prediction=polymorphism	ref_cov=8/11	total_cov=14/18
RA	133	.	NC_000913	1428978	0	G	A	bias_e_value=4166070	bias_p_value=0.897539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.3	fisher_strand_p_value=0.635117	frequency=2.857e-01	ks_quality_p_value=0.917856	major_base=G	major_cov=8/7	major_frequency=7.143e-01	minor_base=A	minor_cov=2/4	new_cov=2/4	polymorphism_frequency=2.857e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=8/7	total_cov=10/11
RA	134	.	NC_000913	1429021	0	T	A	bias_e_value=2314110	bias_p_value=0.498554	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.1	fisher_strand_p_value=0.193027	frequency=3.043e-01	ks_quality_p_value=0.962671	major_base=T	major_cov=10/6	major_frequency=6.957e-01	minor_base=A	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=3.043e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=10/6	total_cov=12/12
RA	135	.	NC_000913	1429022	0	T	A	bias_e_value=3256250	bias_p_value=0.701528	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.9	fisher_strand_p_value=0.370709	frequency=2.917e-01	ks_quality_p_value=0.904077	major_base=T	major_cov=10/7	major_frequency=7.083e-01	minor_base=A	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.917e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=10/7	total_cov=12/12
RA	136	.	NC_000913	1429024	0	A	C	bias_e_value=3428220	bias_p_value=0.738578	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.3	fisher_strand_p_value=0.370709	frequency=2.917e-01	ks_quality_p_value=1	major_base=A	major_cov=10/7	major_frequency=7.083e-01	minor_base=C	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=2.917e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=10/7	total_cov=12/12
RA	137	.	NC_000913	1429027	0	C	T	bias_e_value=3395080	bias_p_value=0.731438	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.6	fisher_strand_p_value=0.370709	frequency=3.043e-01	ks_quality_p_value=0.980777	major_base=C	major_cov=9/7	major_frequency=6.957e-01	minor_base=T	minor_cov=2/5	new_cov=2/5	polymorphism_frequency=3.043e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=9/7	total_cov=11/12
RA	138	.	NC_000913	1429069	0	T	A	bias_e_value=1384960	bias_p_value=0.298377	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.8	fisher_strand_p_value=0.666846	frequency=3.333e-01	ks_quality_p_value=0.129812	major_base=T	major_cov=9/7	major_frequency=6.667e-01	minor_base=A	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.333e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=9/7	total_cov=12/12
RA	139	.	NC_000913	1429072	0	A	C	bias_e_value=3292530	bias_p_value=0.709344	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.3	fisher_strand_p_value=0.666846	frequency=3.333e-01	ks_quality_p_value=0.513417	major_base=A	major_cov=9/7	major_frequency=6.667e-01	minor_base=C	minor_cov=3/5	new_cov=3/5	polymorphism_frequency=3.333e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=9/7	total_cov=12/12
RA	140	.	NC_000913	1429111	0	A	C	bias_e_value=3468540	bias_p_value=0.747263	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.6	fisher_strand_p_value=0.402847	frequency=4.167e-01	ks_quality_p_value=0.942213	major_base=A	major_cov=10/4	major_frequency=5.833e-01	minor_base=C	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=4.167e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=10/4	total_cov=15/9
RA	141	.	NC_000913	1429114	0	C	T	bias_e_value=2675580	bias_p_value=0.576429	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.5	fisher_strand_p_value=0.402847	frequency=4.167e-01	ks_quality_p_value=0.585251	major_base=C	major_cov=10/4	major_frequency=5.833e-01	minor_base=T	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=4.167e-01	polymorphism_score=27.4	prediction=polymorphism	ref_cov=10/4	total_cov=15/9
RA	142	.	NC_000913	1429126	0	A	C	bias_e_value=4378650	bias_p_value=0.943339	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.1	fisher_strand_p_value=0.682838	frequency=4.615e-01	ks_quality_p_value=1	major_base=A	major_cov=10/4	major_frequency=5.385e-01	minor_base=C	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=4.615e-01	polymorphism_score=26.7	prediction=polymorphism	ref_cov=10/4	total_cov=17/9
RA	143	.	NC_000913	1429128	0	A	G	bias_e_value=4294900	bias_p_value=0.925296	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.1	fisher_strand_p_value=0.682838	frequency=4.615e-01	ks_quality_p_value=0.936193	major_base=A	major_cov=10/4	major_frequency=5.385e-01	minor_base=G	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=4.615e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=10/4	total_cov=17/9
RA	144	.	NC_000913	1429160	0	C	G	bias_e_value=4471460	bias_p_value=0.963333	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.7	fisher_strand_p_value=1	frequency=5.143e-01	ks_quality_p_value=0.741718	major_base=G	major_cov=12/6	major_frequency=5.143e-01	minor_base=C	minor_cov=12/5	new_cov=12/6	polymorphism_frequency=5.143e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=12/5	total_cov=24/11
RA	145	.	NC_000913	1429164	0	C	G	bias_e_value=2903780	bias_p_value=0.625593	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.2	fisher_strand_p_value=0.722024	frequency=5.455e-01	ks_quality_p_value=0.376146	major_base=G	major_cov=12/6	major_frequency=5.455e-01	minor_base=C	minor_cov=11/4	new_cov=12/6	polymorphism_frequency=5.455e-01	polymorphism_score=48.8	prediction=polymorphism	ref_cov=11/4	total_cov=23/10
RA	146	.	NC_000913	1429171	0	A	G	bias_e_value=4635330	bias_p_value=0.998638	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.8	fisher_strand_p_value=1	frequency=5.484e-01	ks_quality_p_value=0.948256	major_base=G	major_cov=12/5	major_frequency=5.484e-01	minor_base=A	minor_cov=10/4	new_cov=12/5	polymorphism_frequency=5.484e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=10/4	total_cov=23/10
RA	147	.	NC_000913	1429204	0	C	T	bias_e_value=178507	bias_p_value=0.0384576	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.4	fisher_strand_p_value=0.265926	frequency=4.545e-01	ks_quality_p_value=0.0238647	major_base=C	major_cov=10/8	major_frequency=5.455e-01	minor_base=T	minor_cov=12/3	new_cov=12/3	polymorphism_frequency=4.545e-01	polymorphism_score=43.6	prediction=polymorphism	ref_cov=10/8	total_cov=23/11
RA	148	.	NC_000913	1429207	0	T	G	bias_e_value=685168	bias_p_value=0.147613	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.1	fisher_strand_p_value=0.265926	frequency=4.545e-01	ks_quality_p_value=0.126352	major_base=T	major_cov=10/8	major_frequency=5.455e-01	minor_base=G	minor_cov=12/3	new_cov=12/3	polymorphism_frequency=4.545e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=10/8	total_cov=22/11
RA	149	.	NC_000913	1429225	0	C	T	bias_e_value=168787	bias_p_value=0.0363635	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.4	fisher_strand_p_value=0.151947	frequency=4.706e-01	ks_quality_p_value=0.0390604	major_base=C	major_cov=10/8	major_frequency=5.294e-01	minor_base=T	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=4.706e-01	polymorphism_score=49.6	prediction=polymorphism	ref_cov=10/8	total_cov=23/11
RA	150	.	NC_000913	1429228	0	T	C	bias_e_value=38441.5	bias_p_value=0.00828186	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.4	fisher_strand_p_value=0.151947	frequency=4.706e-01	ks_quality_p_value=0.00693907	major_base=T	major_cov=10/8	major_frequency=5.294e-01	minor_base=C	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=4.706e-01	polymorphism_score=46.4	prediction=polymorphism	ref_cov=10/8	total_cov=23/11
RA	151	.	NC_000913	1429231	0	T	C	bias_e_value=135935	bias_p_value=0.029286	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.2	fisher_strand_p_value=0.14107	frequency=4.848e-01	ks_quality_p_value=0.0325159	major_base=T	major_cov=9/8	major_frequency=5.152e-01	minor_base=C	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=4.848e-01	polymorphism_score=48.6	prediction=polymorphism	ref_cov=9/8	total_cov=22/11
RA	152	.	NC_000913	1429235	0	T	C	bias_e_value=807685	bias_p_value=0.174008	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.14107	frequency=4.848e-01	ks_quality_p_value=0.295188	major_base=T	major_cov=9/8	major_frequency=5.152e-01	minor_base=C	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=4.848e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=9/8	total_cov=22/11
RA	153	.	NC_000913	1429236	0	T	A	bias_e_value=1881910	bias_p_value=0.405439	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.2	fisher_strand_p_value=0.135052	frequency=5.000e-01	ks_quality_p_value=1	major_base=A	major_cov=13/3	major_frequency=5.000e-01	minor_base=T	minor_cov=8/8	new_cov=13/3	polymorphism_frequency=5.000e-01	polymorphism_score=44.8	prediction=polymorphism	ref_cov=8/8	total_cov=21/11
RA	154	.	NC_000913	1429240	0	G	T	bias_e_value=1881910	bias_p_value=0.405439	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.4	fisher_strand_p_value=0.135052	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=13/3	major_frequency=5.000e-01	minor_base=G	minor_cov=8/8	new_cov=13/3	polymorphism_frequency=5.000e-01	polymorphism_score=44.7	prediction=polymorphism	ref_cov=8/8	total_cov=21/11
RA	155	.	NC_000913	1429243	0	A	C	bias_e_value=1100430	bias_p_value=0.237078	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.6	fisher_strand_p_value=0.0658929	frequency=5.161e-01	ks_quality_p_value=0.955586	major_base=C	major_cov=13/3	major_frequency=5.161e-01	minor_base=A	minor_cov=7/8	new_cov=13/3	polymorphism_frequency=5.161e-01	polymorphism_score=41.7	prediction=polymorphism	ref_cov=7/8	total_cov=20/11
RA	156	.	NC_000913	1429246	0	A	T	bias_e_value=1081670	bias_p_value=0.233036	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.0	fisher_strand_p_value=0.0658929	frequency=5.161e-01	ks_quality_p_value=0.933497	major_base=T	major_cov=13/3	major_frequency=5.161e-01	minor_base=A	minor_cov=7/8	new_cov=13/3	polymorphism_frequency=5.161e-01	polymorphism_score=39.3	prediction=polymorphism	ref_cov=7/8	total_cov=20/11
RA	157	.	NC_000913	1429249	0	C	T	bias_e_value=1586720	bias_p_value=0.341843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=11.2	fisher_strand_p_value=0.225587	frequency=5.517e-01	ks_quality_p_value=0.465834	major_base=T	major_cov=13/3	major_frequency=5.517e-01	minor_base=C	minor_cov=7/6	new_cov=13/3	polymorphism_frequency=5.517e-01	polymorphism_score=34.8	prediction=polymorphism	ref_cov=7/6	total_cov=20/10
RA	158	.	NC_000913	1429252	0	G	A	bias_e_value=1685740	bias_p_value=0.363176	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.3	fisher_strand_p_value=0.121639	frequency=5.333e-01	ks_quality_p_value=0.943335	major_base=A	major_cov=13/3	major_frequency=5.333e-01	minor_base=G	minor_cov=7/7	new_cov=13/3	polymorphism_frequency=5.333e-01	polymorphism_score=39.7	prediction=polymorphism	ref_cov=7/7	total_cov=20/10
RA	159	.	NC_000913	1429255	0	G	A	bias_e_value=1703660	bias_p_value=0.367037	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.0	fisher_strand_p_value=0.121639	frequency=5.333e-01	ks_quality_p_value=0.958048	major_base=A	major_cov=13/3	major_frequency=5.333e-01	minor_base=G	minor_cov=7/7	new_cov=13/3	polymorphism_frequency=5.333e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=7/7	total_cov=20/10
RA	160	.	NC_000913	1429258	0	A	G	bias_e_value=1527290	bias_p_value=0.32904	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.2	fisher_strand_p_value=0.121639	frequency=5.333e-01	ks_quality_p_value=0.817757	major_base=G	major_cov=13/3	major_frequency=5.333e-01	minor_base=A	minor_cov=7/7	new_cov=13/3	polymorphism_frequency=5.333e-01	polymorphism_score=40.8	prediction=polymorphism	ref_cov=7/7	total_cov=20/10
RA	161	.	NC_000913	1429261	0	T	C	bias_e_value=721741	bias_p_value=0.155492	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.7	fisher_strand_p_value=0.121639	frequency=5.333e-01	ks_quality_p_value=0.295511	major_base=C	major_cov=13/3	major_frequency=5.333e-01	minor_base=T	minor_cov=7/7	new_cov=13/3	polymorphism_frequency=5.333e-01	polymorphism_score=42.4	prediction=polymorphism	ref_cov=7/7	total_cov=20/10
RA	162	.	NC_000913	1429273	0	T	C	bias_e_value=2270520	bias_p_value=0.489161	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.3	fisher_strand_p_value=0.225587	frequency=5.517e-01	ks_quality_p_value=0.799205	major_base=C	major_cov=13/3	major_frequency=5.517e-01	minor_base=T	minor_cov=7/6	new_cov=13/3	polymorphism_frequency=5.517e-01	polymorphism_score=40.1	prediction=polymorphism	ref_cov=7/6	total_cov=20/9
RA	163	.	NC_000913	1429291	0	T	A	bias_e_value=2703580	bias_p_value=0.582462	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.5	fisher_strand_p_value=0.239967	frequency=6.250e-01	ks_quality_p_value=1	major_base=A	major_cov=16/4	major_frequency=6.250e-01	minor_base=T	minor_cov=7/5	new_cov=16/4	polymorphism_frequency=6.250e-01	polymorphism_score=30.6	prediction=polymorphism	ref_cov=7/5	total_cov=23/9
RA	164	.	NC_000913	1429297	0	C	G	bias_e_value=2618590	bias_p_value=0.564149	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.7	fisher_strand_p_value=0.273498	frequency=6.111e-01	ks_quality_p_value=0.83135	major_base=G	major_cov=17/5	major_frequency=6.111e-01	minor_base=C	minor_cov=8/6	new_cov=17/5	polymorphism_frequency=6.111e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=8/6	total_cov=25/11
RA	165	.	NC_000913	1429300	0	T	G	bias_e_value=3300140	bias_p_value=0.710983	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.2	fisher_strand_p_value=0.459036	frequency=6.471e-01	ks_quality_p_value=0.749184	major_base=G	major_cov=16/6	major_frequency=6.471e-01	minor_base=T	minor_cov=7/5	new_cov=16/6	polymorphism_frequency=6.471e-01	polymorphism_score=26.4	prediction=polymorphism	ref_cov=7/5	total_cov=24/11
RA	166	.	NC_000913	1429319	0	G	T	bias_e_value=2186710	bias_p_value=0.471106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.5	fisher_strand_p_value=0.175688	frequency=6.000e-01	ks_quality_p_value=0.967216	major_base=T	major_cov=18/6	major_frequency=6.000e-01	minor_base=G	minor_cov=8/8	new_cov=18/6	polymorphism_frequency=6.000e-01	polymorphism_score=44.9	prediction=polymorphism	ref_cov=8/8	total_cov=26/14
RA	167	.	NC_000913	1429345	0	T	G	bias_e_value=1532920	bias_p_value=0.330253	consensus_reject=FREQUENCY_CUTOFF	consensus_score=28.7	fisher_strand_p_value=0.330428	frequency=6.098e-01	ks_quality_p_value=0.30263	major_base=G	major_cov=17/8	major_frequency=6.098e-01	minor_base=T	minor_cov=8/8	new_cov=17/8	polymorphism_frequency=6.098e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=8/8	total_cov=25/16
RA	168	.	NC_000913	1429353	0	C	T	bias_e_value=2653570	bias_p_value=0.571687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.1	fisher_strand_p_value=0.509156	frequency=5.897e-01	ks_quality_p_value=0.456639	major_base=T	major_cov=15/8	major_frequency=5.897e-01	minor_base=C	minor_cov=8/8	new_cov=15/8	polymorphism_frequency=5.897e-01	polymorphism_score=44.4	prediction=polymorphism	ref_cov=8/8	total_cov=23/16
RA	169	.	NC_000913	1429354	0	A	G	bias_e_value=3724540	bias_p_value=0.802417	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.3	fisher_strand_p_value=0.509156	frequency=5.897e-01	ks_quality_p_value=0.867016	major_base=G	major_cov=15/8	major_frequency=5.897e-01	minor_base=A	minor_cov=8/8	new_cov=15/8	polymorphism_frequency=5.897e-01	polymorphism_score=44.1	prediction=polymorphism	ref_cov=8/8	total_cov=23/16
RA	170	.	NC_000913	1429360	0	C	T	bias_e_value=3509370	bias_p_value=0.756059	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.3	fisher_strand_p_value=0.509156	frequency=5.897e-01	ks_quality_p_value=0.763541	major_base=T	major_cov=15/8	major_frequency=5.897e-01	minor_base=C	minor_cov=8/8	new_cov=15/8	polymorphism_frequency=5.897e-01	polymorphism_score=42.2	prediction=polymorphism	ref_cov=8/8	total_cov=23/16
RA	171	.	NC_000913	1429364	0	T	C	bias_e_value=3753430	bias_p_value=0.808642	consensus_reject=FREQUENCY_CUTOFF	consensus_score=27.6	fisher_strand_p_value=0.509156	frequency=5.897e-01	ks_quality_p_value=0.882128	major_base=C	major_cov=15/8	major_frequency=5.897e-01	minor_base=T	minor_cov=8/8	new_cov=15/8	polymorphism_frequency=5.897e-01	polymorphism_score=41.9	prediction=polymorphism	ref_cov=8/8	total_cov=23/16
RA	172	.	NC_000913	1429404	0	C	T	bias_e_value=712238	bias_p_value=0.153445	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.3	fisher_strand_p_value=0.747912	frequency=4.615e-01	ks_quality_p_value=0.0472405	major_base=C	major_cov=11/10	major_frequency=5.385e-01	minor_base=T	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=4.615e-01	polymorphism_score=56.2	prediction=polymorphism	ref_cov=11/10	total_cov=22/17
RA	173	.	NC_000913	1429416	0	A	G	bias_e_value=313652	bias_p_value=0.0675733	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.7	fisher_strand_p_value=1	frequency=4.250e-01	ks_quality_p_value=0.012568	major_base=A	major_cov=13/10	major_frequency=5.750e-01	minor_base=G	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=4.250e-01	polymorphism_score=51.8	prediction=polymorphism	ref_cov=13/10	total_cov=23/17
RA	174	.	NC_000913	1429417	0	C	T	bias_e_value=4601200	bias_p_value=0.991285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.4	fisher_strand_p_value=1	frequency=4.146e-01	ks_quality_p_value=0.870915	major_base=C	major_cov=13/11	major_frequency=5.854e-01	minor_base=T	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=4.146e-01	polymorphism_score=46.4	prediction=polymorphism	ref_cov=13/11	total_cov=23/18
RA	175	.	NC_000913	1429425	0	C	A	bias_e_value=1132610	bias_p_value=0.244011	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.8	fisher_strand_p_value=1	frequency=4.250e-01	ks_quality_p_value=0.0654917	major_base=C	major_cov=14/9	major_frequency=5.750e-01	minor_base=A	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=4.250e-01	polymorphism_score=46.7	prediction=polymorphism	ref_cov=14/9	total_cov=24/16
RA	176	.	NC_000913	1429435	0	G	A	bias_e_value=4435320	bias_p_value=0.955548	consensus_reject=FREQUENCY_CUTOFF	consensus_score=14.2	fisher_strand_p_value=1	frequency=4.250e-01	ks_quality_p_value=0.717051	major_base=G	major_cov=14/9	major_frequency=5.750e-01	minor_base=A	minor_cov=10/7	new_cov=10/7	polymorphism_frequency=4.250e-01	polymorphism_score=49.4	prediction=polymorphism	ref_cov=14/9	total_cov=24/16
RA	177	.	NC_000913	1429442	0	A	G	bias_e_value=3698300	bias_p_value=0.796763	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.6	fisher_strand_p_value=1	frequency=4.000e-01	ks_quality_p_value=0.434598	major_base=A	major_cov=14/10	major_frequency=6.000e-01	minor_base=G	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=4.000e-01	polymorphism_score=43.3	prediction=polymorphism	ref_cov=14/10	total_cov=23/17
RA	178	.	NC_000913	1429444	0	T	C	bias_e_value=4391640	bias_p_value=0.946138	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.9	fisher_strand_p_value=1	frequency=4.324e-01	ks_quality_p_value=0.690281	major_base=T	major_cov=12/9	major_frequency=5.676e-01	minor_base=C	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=4.324e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=12/9	total_cov=23/17
RA	179	.	NC_000913	1429453	0	C	T	bias_e_value=4580450	bias_p_value=0.986814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.0	fisher_strand_p_value=1	frequency=3.784e-01	ks_quality_p_value=0.842065	major_base=C	major_cov=13/10	major_frequency=6.216e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.784e-01	polymorphism_score=31.0	prediction=polymorphism	ref_cov=13/10	total_cov=22/16
RA	180	.	NC_000913	1429454	0	A	G	bias_e_value=4639510	bias_p_value=0.999538	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.2	fisher_strand_p_value=1	frequency=3.684e-01	ks_quality_p_value=0.969765	major_base=A	major_cov=14/10	major_frequency=6.316e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.684e-01	polymorphism_score=29.4	prediction=polymorphism	ref_cov=14/10	total_cov=22/16
RA	181	.	NC_000913	1429462	0	C	T	bias_e_value=3272440	bias_p_value=0.705015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=1	frequency=3.590e-01	ks_quality_p_value=0.338354	major_base=C	major_cov=14/11	major_frequency=6.410e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.590e-01	polymorphism_score=35.4	prediction=polymorphism	ref_cov=14/11	total_cov=22/17
RA	182	.	NC_000913	1429463	0	C	G	bias_e_value=280137	bias_p_value=0.0603528	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.9	fisher_strand_p_value=1	frequency=3.784e-01	ks_quality_p_value=0.0109433	major_base=C	major_cov=12/11	major_frequency=6.216e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.784e-01	polymorphism_score=50.5	prediction=polymorphism	ref_cov=12/11	total_cov=22/17
RA	183	.	NC_000913	1429464	0	G	C	bias_e_value=2322040	bias_p_value=0.500263	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.5	fisher_strand_p_value=1	frequency=3.590e-01	ks_quality_p_value=0.186839	major_base=G	major_cov=15/10	major_frequency=6.410e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.590e-01	polymorphism_score=45.2	prediction=polymorphism	ref_cov=15/10	total_cov=23/17
RA	184	.	NC_000913	1429466	0	G	C	bias_e_value=2967600	bias_p_value=0.63934	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.0	fisher_strand_p_value=1	frequency=3.415e-01	ks_quality_p_value=0.282293	major_base=G	major_cov=16/11	major_frequency=6.585e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.415e-01	polymorphism_score=48.0	prediction=polymorphism	ref_cov=16/11	total_cov=24/17
RA	185	.	NC_000913	1429470	0	C	T	bias_e_value=2789500	bias_p_value=0.600972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.0	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.253187	major_base=C	major_cov=15/11	major_frequency=6.500e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=38.4	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	186	.	NC_000913	1429471	0	G	C	bias_e_value=2700610	bias_p_value=0.581822	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.7	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.239519	major_base=G	major_cov=15/11	major_frequency=6.500e-01	minor_base=C	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=46.1	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	187	.	NC_000913	1429474	0	A	G	bias_e_value=4275270	bias_p_value=0.921067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.6	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.629967	major_base=A	major_cov=15/11	major_frequency=6.500e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=33.7	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	188	.	NC_000913	1429475	0	A	G	bias_e_value=2168880	bias_p_value=0.467265	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.1	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.167769	major_base=A	major_cov=15/11	major_frequency=6.500e-01	minor_base=G	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	189	.	NC_000913	1429479	0	A	T	bias_e_value=4275270	bias_p_value=0.921067	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.0	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.629967	major_base=A	major_cov=15/11	major_frequency=6.500e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=40.8	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	190	.	NC_000913	1429482	0	C	T	bias_e_value=1273640	bias_p_value=0.274394	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.8	fisher_strand_p_value=1	frequency=3.333e-01	ks_quality_p_value=0.0769882	major_base=C	major_cov=15/11	major_frequency=6.667e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=3.333e-01	polymorphism_score=29.9	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	191	.	NC_000913	1429484	0	G	A	bias_e_value=2662600	bias_p_value=0.573632	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.5	fisher_strand_p_value=1	frequency=3.250e-01	ks_quality_p_value=0.233836	major_base=G	major_cov=15/12	major_frequency=6.750e-01	minor_base=A	minor_cov=8/5	new_cov=8/5	polymorphism_frequency=3.250e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=15/12	total_cov=23/17
RA	192	.	NC_000913	1429492	0	T	A	bias_e_value=1512910	bias_p_value=0.325943	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.0981333	major_base=T	major_cov=15/11	major_frequency=6.500e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=44.6	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	193	.	NC_000913	1429493	0	G	A	bias_e_value=2700610	bias_p_value=0.581822	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.9	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.239519	major_base=G	major_cov=15/11	major_frequency=6.500e-01	minor_base=A	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=35.3	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	194	.	NC_000913	1429495	0	G	T	bias_e_value=2522290	bias_p_value=0.543404	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.7	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.213652	major_base=G	major_cov=15/11	major_frequency=6.500e-01	minor_base=T	minor_cov=8/6	new_cov=8/6	polymorphism_frequency=3.500e-01	polymorphism_score=35.0	prediction=polymorphism	ref_cov=15/11	total_cov=23/17
RA	195	.	NC_000913	1429510	0	A	C	bias_e_value=3468290	bias_p_value=0.747211	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.9	fisher_strand_p_value=1	frequency=3.810e-01	ks_quality_p_value=0.379514	major_base=A	major_cov=15/11	major_frequency=6.190e-01	minor_base=C	minor_cov=9/7	new_cov=9/7	polymorphism_frequency=3.810e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=15/11	total_cov=24/18
RA	196	.	NC_000913	1429522	0	A	C	bias_e_value=4224890	bias_p_value=0.910212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=26.6	fisher_strand_p_value=1	frequency=3.810e-01	ks_quality_p_value=0.607364	major_base=A	major_cov=15/11	major_frequency=6.190e-01	minor_base=C	minor_cov=10/6	new_cov=10/6	polymorphism_frequency=3.810e-01	polymorphism_score=36.6	prediction=polymorphism	ref_cov=15/11	total_cov=25/17
RA	197	.	NC_000913	1429534	0	C	T	bias_e_value=1568200	bias_p_value=0.337853	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.4	fisher_strand_p_value=1	frequency=3.158e-01	ks_quality_p_value=0.103322	major_base=C	major_cov=15/11	major_frequency=6.842e-01	minor_base=T	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=3.158e-01	polymorphism_score=29.6	prediction=polymorphism	ref_cov=15/11	total_cov=22/16
RA	198	.	NC_000913	1429537	0	G	A	bias_e_value=36014.1	bias_p_value=0.0077589	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.3	fisher_strand_p_value=0.696754	frequency=2.727e-01	ks_quality_p_value=0.00140435	major_base=G	major_cov=14/10	major_frequency=7.273e-01	minor_base=A	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=2.727e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=14/10	total_cov=19/15
RA	199	.	NC_000913	1429543	0	G	A	bias_e_value=569886	bias_p_value=0.122777	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.4	fisher_strand_p_value=0.717565	frequency=2.941e-01	ks_quality_p_value=0.0369556	major_base=G	major_cov=14/10	major_frequency=7.059e-01	minor_base=A	minor_cov=5/5	new_cov=5/5	polymorphism_frequency=2.941e-01	polymorphism_score=25.6	prediction=polymorphism	ref_cov=14/10	total_cov=19/15
RA	200	.	NC_000913	1429550	0	T	G	bias_e_value=3120080	bias_p_value=0.672191	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.4	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.309253	major_base=T	major_cov=14/11	major_frequency=7.353e-01	minor_base=G	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.647e-01	polymorphism_score=22.9	prediction=polymorphism	ref_cov=14/11	total_cov=19/15
RA	201	.	NC_000913	1429551	0	C	A	bias_e_value=3236880	bias_p_value=0.697354	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.4	fisher_strand_p_value=1	frequency=2.647e-01	ks_quality_p_value=0.331352	major_base=C	major_cov=14/11	major_frequency=7.353e-01	minor_base=A	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=2.647e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=14/11	total_cov=19/15
RA	202	.	NC_000913	1429558	0	T	C	bias_e_value=4618480	bias_p_value=0.995007	consensus_reject=FREQUENCY_CUTOFF	consensus_score=58.9	fisher_strand_p_value=1	frequency=2.778e-01	ks_quality_p_value=0.901749	major_base=T	major_cov=14/12	major_frequency=7.222e-01	minor_base=C	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.778e-01	polymorphism_score=21.4	prediction=polymorphism	ref_cov=14/12	total_cov=21/16
RA	203	.	NC_000913	1429562	0	A	G	bias_e_value=2287530	bias_p_value=0.492827	consensus_reject=FREQUENCY_CUTOFF	consensus_score=53.2	fisher_strand_p_value=0.724575	frequency=2.703e-01	ks_quality_p_value=0.251785	major_base=A	major_cov=14/13	major_frequency=7.297e-01	minor_base=G	minor_cov=6/4	new_cov=6/4	polymorphism_frequency=2.703e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=14/13	total_cov=20/17
RA	204	.	NC_000913	1429569	0	G	A	bias_e_value=719349	bias_p_value=0.154977	consensus_reject=FREQUENCY_CUTOFF	consensus_score=44.6	fisher_strand_p_value=0.461302	frequency=2.703e-01	ks_quality_p_value=0.0775869	major_base=G	major_cov=14/13	major_frequency=7.297e-01	minor_base=A	minor_cov=7/3	new_cov=7/3	polymorphism_frequency=2.703e-01	polymorphism_score=25.7	prediction=polymorphism	ref_cov=14/13	total_cov=21/16
RA	205	.	NC_000913	1429571	0	A	G	bias_e_value=970890	bias_p_value=0.209169	consensus_reject=FREQUENCY_CUTOFF	consensus_score=47.0	fisher_strand_p_value=0.281679	frequency=2.895e-01	ks_quality_p_value=0.188742	major_base=A	major_cov=13/14	major_frequency=7.105e-01	minor_base=G	minor_cov=8/3	new_cov=8/3	polymorphism_frequency=2.895e-01	polymorphism_score=26.3	prediction=polymorphism	ref_cov=13/14	total_cov=21/17
RA	206	.	NC_000913	1429580	0	A	G	bias_e_value=4240850	bias_p_value=0.91365	consensus_reject=FREQUENCY_CUTOFF	consensus_score=34.0	fisher_strand_p_value=1	frequency=3.243e-01	ks_quality_p_value=0.61434	major_base=A	major_cov=12/13	major_frequency=6.757e-01	minor_base=G	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=3.243e-01	polymorphism_score=27.5	prediction=polymorphism	ref_cov=12/13	total_cov=18/19
RA	207	.	NC_000913	1429597	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=55.9	fisher_strand_p_value=1	frequency=2.973e-01	ks_quality_p_value=1	major_base=A	major_cov=13/13	major_frequency=7.027e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.973e-01	polymorphism_score=24.0	prediction=polymorphism	ref_cov=13/13	total_cov=19/18
RA	208	.	NC_000913	1429598	0	T	G	bias_e_value=4638540	bias_p_value=0.999331	consensus_reject=FREQUENCY_CUTOFF	consensus_score=40.7	fisher_strand_p_value=1	frequency=2.973e-01	ks_quality_p_value=0.963634	major_base=T	major_cov=13/13	major_frequency=7.027e-01	minor_base=G	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.973e-01	polymorphism_score=19.6	prediction=polymorphism	ref_cov=13/13	total_cov=19/18
RA	209	.	NC_000913	1429599	0	C	A	bias_e_value=4234750	bias_p_value=0.912336	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.9	fisher_strand_p_value=1	frequency=2.973e-01	ks_quality_p_value=0.611653	major_base=C	major_cov=13/13	major_frequency=7.027e-01	minor_base=A	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.973e-01	polymorphism_score=24.3	prediction=polymorphism	ref_cov=13/13	total_cov=19/18
RA	210	.	NC_000913	1429609	0	T	C	bias_e_value=3402870	bias_p_value=0.733117	consensus_reject=FREQUENCY_CUTOFF	consensus_score=39.6	fisher_strand_p_value=1	frequency=2.973e-01	ks_quality_p_value=0.365247	major_base=T	major_cov=13/13	major_frequency=7.027e-01	minor_base=C	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.973e-01	polymorphism_score=22.0	prediction=polymorphism	ref_cov=13/13	total_cov=19/18
RA	211	.	NC_000913	1429612	0	C	A	bias_e_value=4417080	bias_p_value=0.951618	consensus_reject=FREQUENCY_CUTOFF	consensus_score=45.1	fisher_strand_p_value=0.731094	frequency=3.077e-01	ks_quality_p_value=0.965014	major_base=C	major_cov=13/14	major_frequency=6.923e-01	minor_base=A	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=3.077e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=13/14	total_cov=20/19
RA	212	.	NC_000913	1429615	0	T	C	bias_e_value=4112570	bias_p_value=0.886015	consensus_reject=FREQUENCY_CUTOFF	consensus_score=57.3	fisher_strand_p_value=1	frequency=2.895e-01	ks_quality_p_value=0.562279	major_base=T	major_cov=13/14	major_frequency=7.105e-01	minor_base=C	minor_cov=6/5	new_cov=6/5	polymorphism_frequency=2.895e-01	polymorphism_score=20.8	prediction=polymorphism	ref_cov=13/14	total_cov=19/19
RA	213	.	NC_000913	1429632	0	G	A	bias_e_value=4576270	bias_p_value=0.985915	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.4	fisher_strand_p_value=1	frequency=3.500e-01	ks_quality_p_value=0.836924	major_base=G	major_cov=12/14	major_frequency=6.500e-01	minor_base=A	minor_cov=7/7	new_cov=7/7	polymorphism_frequency=3.500e-01	polymorphism_score=34.1	prediction=polymorphism	ref_cov=12/14	total_cov=19/21
RA	214	.	NC_000913	1429682	0	T	G	bias_e_value=4415890	bias_p_value=0.951362	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.3	fisher_strand_p_value=1	frequency=5.625e-01	ks_quality_p_value=0.704781	major_base=G	major_cov=14/13	major_frequency=5.625e-01	minor_base=T	minor_cov=10/11	new_cov=14/13	polymorphism_frequency=5.625e-01	polymorphism_score=50.5	prediction=polymorphism	ref_cov=10/11	total_cov=24/24
RA	215	.	NC_000913	1429692	0	T	A	bias_e_value=4637120	bias_p_value=0.999023	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.2	fisher_strand_p_value=1	frequency=5.385e-01	ks_quality_p_value=0.95612	major_base=A	major_cov=13/15	major_frequency=5.385e-01	minor_base=T	minor_cov=12/12	new_cov=13/15	polymorphism_frequency=5.385e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=12/12	total_cov=25/27
RA	216	.	NC_000913	1429702	0	A	C	bias_e_value=3610740	bias_p_value=0.777899	consensus_reject=FREQUENCY_CUTOFF	consensus_score=10.3	fisher_strand_p_value=0.785828	frequency=5.472e-01	ks_quality_p_value=0.5251	major_base=C	major_cov=13/16	major_frequency=5.472e-01	minor_base=A	minor_cov=12/12	new_cov=13/16	polymorphism_frequency=5.472e-01	polymorphism_score=71.2	prediction=polymorphism	ref_cov=12/12	total_cov=25/28
RA	217	.	NC_000913	1429708	0	A	G	bias_e_value=1247880	bias_p_value=0.268843	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.8	fisher_strand_p_value=0.586157	frequency=5.660e-01	ks_quality_p_value=0.127671	major_base=G	major_cov=13/17	major_frequency=5.660e-01	minor_base=A	minor_cov=12/11	new_cov=13/17	polymorphism_frequency=5.660e-01	polymorphism_score=65.5	prediction=polymorphism	ref_cov=12/11	total_cov=25/28
RA	218	.	NC_000913	1429714	0	A	C	bias_e_value=1557560	bias_p_value=0.335562	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.7	fisher_strand_p_value=0.293608	frequency=5.263e-01	ks_quality_p_value=0.348474	major_base=C	major_cov=12/18	major_frequency=5.263e-01	minor_base=A	minor_cov=15/12	new_cov=12/18	polymorphism_frequency=5.263e-01	polymorphism_score=72.9	prediction=polymorphism	ref_cov=15/12	total_cov=27/30
RA	219	.	NC_000913	1429724	0	A	G	bias_e_value=2665450	bias_p_value=0.574246	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.4	fisher_strand_p_value=0.428208	frequency=5.345e-01	ks_quality_p_value=0.547069	major_base=G	major_cov=12/19	major_frequency=5.345e-01	minor_base=A	minor_cov=14/13	new_cov=12/19	polymorphism_frequency=5.345e-01	polymorphism_score=77.4	prediction=polymorphism	ref_cov=14/13	total_cov=26/32
RA	220	.	NC_000913	1429732	0	G	A	bias_e_value=1746350	bias_p_value=0.376235	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.8	fisher_strand_p_value=0.298845	frequency=5.333e-01	ks_quality_p_value=0.404397	major_base=A	major_cov=12/20	major_frequency=5.333e-01	minor_base=G	minor_cov=15/13	new_cov=12/20	polymorphism_frequency=5.333e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=15/13	total_cov=27/33
RA	221	.	NC_000913	1429735	0	A	G	bias_e_value=1234620	bias_p_value=0.265987	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.8	fisher_strand_p_value=0.436509	frequency=5.167e-01	ks_quality_p_value=0.168924	major_base=G	major_cov=12/19	major_frequency=5.167e-01	minor_base=A	minor_cov=15/14	new_cov=12/19	polymorphism_frequency=5.167e-01	polymorphism_score=83.2	prediction=polymorphism	ref_cov=15/14	total_cov=27/33
RA	222	.	NC_000913	1429741	0	A	G	bias_e_value=3004820	bias_p_value=0.64736	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.6	fisher_strand_p_value=0.295742	frequency=4.821e-01	ks_quality_p_value=0.97616	major_base=A	major_cov=15/14	major_frequency=5.179e-01	minor_base=G	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.821e-01	polymorphism_score=76.1	prediction=polymorphism	ref_cov=15/14	total_cov=25/31
RA	223	.	NC_000913	1429744	0	T	C	bias_e_value=2257150	bias_p_value=0.486281	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.2	fisher_strand_p_value=0.418245	frequency=4.909e-01	ks_quality_p_value=0.427055	major_base=T	major_cov=14/14	major_frequency=5.091e-01	minor_base=C	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.909e-01	polymorphism_score=79.7	prediction=polymorphism	ref_cov=14/14	total_cov=25/31
RA	224	.	NC_000913	1429747	0	G	C	bias_e_value=916883	bias_p_value=0.197534	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.3	fisher_strand_p_value=0.113499	frequency=5.088e-01	ks_quality_p_value=0.433923	major_base=C	major_cov=10/19	major_frequency=5.088e-01	minor_base=G	minor_cov=16/12	new_cov=10/19	polymorphism_frequency=5.088e-01	polymorphism_score=96.2	prediction=polymorphism	ref_cov=16/12	total_cov=26/31
RA	225	.	NC_000913	1429750	0	C	T	bias_e_value=576081	bias_p_value=0.124111	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.9	fisher_strand_p_value=0.192526	frequency=4.576e-01	ks_quality_p_value=0.13965	major_base=C	major_cov=18/14	major_frequency=5.424e-01	minor_base=T	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.576e-01	polymorphism_score=82.1	prediction=polymorphism	ref_cov=18/14	total_cov=28/31
RA	226	.	NC_000913	1429753	0	G	A	bias_e_value=7954.04	bias_p_value=0.00171362	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.8	fisher_strand_p_value=0.192526	frequency=4.576e-01	ks_quality_p_value=0.000923838	major_base=G	major_cov=18/14	major_frequency=5.424e-01	minor_base=A	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.576e-01	polymorphism_score=83.6	prediction=polymorphism	ref_cov=18/14	total_cov=28/31
RA	227	.	NC_000913	1429756	0	C	A	bias_e_value=44924.7	bias_p_value=0.0096786	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.2	fisher_strand_p_value=0.192526	frequency=4.576e-01	ks_quality_p_value=0.00654924	major_base=C	major_cov=18/14	major_frequency=5.424e-01	minor_base=A	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.576e-01	polymorphism_score=83.8	prediction=polymorphism	ref_cov=18/14	total_cov=28/31
RA	228	.	NC_000913	1429759	0	G	A	bias_e_value=632825	bias_p_value=0.136336	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.2	fisher_strand_p_value=0.124212	frequency=4.655e-01	ks_quality_p_value=0.244143	major_base=G	major_cov=18/13	major_frequency=5.345e-01	minor_base=A	minor_cov=10/17	new_cov=10/17	polymorphism_frequency=4.655e-01	polymorphism_score=84.4	prediction=polymorphism	ref_cov=18/13	total_cov=28/31
RA	229	.	NC_000913	1429767	0	C	T	bias_e_value=1436130	bias_p_value=0.309402	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.7	fisher_strand_p_value=0.128383	frequency=4.667e-01	ks_quality_p_value=0.70974	major_base=C	major_cov=18/14	major_frequency=5.333e-01	minor_base=T	minor_cov=10/18	new_cov=10/18	polymorphism_frequency=4.667e-01	polymorphism_score=81.6	prediction=polymorphism	ref_cov=18/14	total_cov=28/32
RA	230	.	NC_000913	1429780	0	A	G	bias_e_value=1032680	bias_p_value=0.222481	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.1	fisher_strand_p_value=0.188458	frequency=4.407e-01	ks_quality_p_value=0.306527	major_base=A	major_cov=18/15	major_frequency=5.593e-01	minor_base=G	minor_cov=9/17	new_cov=9/17	polymorphism_frequency=4.407e-01	polymorphism_score=76.7	prediction=polymorphism	ref_cov=18/15	total_cov=27/32
RA	231	.	NC_000913	1429783	0	G	A	bias_e_value=1834030	bias_p_value=0.395123	consensus_reject=FREQUENCY_CUTOFF	consensus_score=15.0	fisher_strand_p_value=0.188458	frequency=4.407e-01	ks_quality_p_value=0.689537	major_base=G	major_cov=18/15	major_frequency=5.593e-01	minor_base=A	minor_cov=9/17	new_cov=9/17	polymorphism_frequency=4.407e-01	polymorphism_score=81.5	prediction=polymorphism	ref_cov=18/15	total_cov=27/32
RA	232	.	NC_000913	1429816	0	C	T	bias_e_value=568985	bias_p_value=0.122582	consensus_reject=FREQUENCY_CUTOFF	consensus_score=16.5	fisher_strand_p_value=0.0593414	frequency=4.107e-01	ks_quality_p_value=0.445971	major_base=C	major_cov=19/14	major_frequency=5.893e-01	minor_base=T	minor_cov=7/16	new_cov=7/16	polymorphism_frequency=4.107e-01	polymorphism_score=67.6	prediction=polymorphism	ref_cov=19/14	total_cov=27/30
RA	233	.	NC_000913	1429820	0	A	G	bias_e_value=263989	bias_p_value=0.056874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=31.7	fisher_strand_p_value=0.10052	frequency=3.889e-01	ks_quality_p_value=0.101262	major_base=A	major_cov=19/14	major_frequency=6.111e-01	minor_base=G	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=3.889e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=19/14	total_cov=26/28
RA	234	.	NC_000913	1429823	0	A	C	bias_e_value=263989	bias_p_value=0.056874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=17.9	fisher_strand_p_value=0.10052	frequency=3.889e-01	ks_quality_p_value=0.101262	major_base=A	major_cov=19/14	major_frequency=6.111e-01	minor_base=C	minor_cov=7/14	new_cov=7/14	polymorphism_frequency=3.889e-01	polymorphism_score=64.8	prediction=polymorphism	ref_cov=19/14	total_cov=26/28
RA	235	.	NC_000913	1429851	0	G	A	bias_e_value=81284.4	bias_p_value=0.0175119	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.2	fisher_strand_p_value=0.254184	frequency=3.519e-01	ks_quality_p_value=0.00985724	major_base=G	major_cov=20/15	major_frequency=6.481e-01	minor_base=A	minor_cov=7/12	new_cov=7/12	polymorphism_frequency=3.519e-01	polymorphism_score=56.3	prediction=polymorphism	ref_cov=20/15	total_cov=27/27
RA	236	.	NC_000913	1429858	0	C	T	bias_e_value=291367	bias_p_value=0.0627723	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.9	fisher_strand_p_value=0.148531	frequency=3.600e-01	ks_quality_p_value=0.0773047	major_base=C	major_cov=18/14	major_frequency=6.400e-01	minor_base=T	minor_cov=6/12	new_cov=6/12	polymorphism_frequency=3.600e-01	polymorphism_score=49.3	prediction=polymorphism	ref_cov=18/14	total_cov=25/27
RA	237	.	NC_000913	1429861	0	G	C	bias_e_value=45132.4	bias_p_value=0.00972336	consensus_reject=FREQUENCY_CUTOFF	consensus_score=42.0	fisher_strand_p_value=0.152089	frequency=3.462e-01	ks_quality_p_value=0.00833468	major_base=G	major_cov=19/15	major_frequency=6.538e-01	minor_base=C	minor_cov=6/12	new_cov=6/12	polymorphism_frequency=3.462e-01	polymorphism_score=64.7	prediction=polymorphism	ref_cov=19/15	total_cov=25/27
RA	238	.	NC_000913	1429863	0	A	G	bias_e_value=196699	bias_p_value=0.0423768	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.4	fisher_strand_p_value=0.244996	frequency=3.396e-01	ks_quality_p_value=0.0291026	major_base=A	major_cov=19/16	major_frequency=6.604e-01	minor_base=G	minor_cov=6/12	new_cov=6/12	polymorphism_frequency=3.396e-01	polymorphism_score=47.1	prediction=polymorphism	ref_cov=19/16	total_cov=25/28
RA	239	.	NC_000913	1429888	0	C	T	bias_e_value=104438	bias_p_value=0.0225002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.7	fisher_strand_p_value=0.220316	frequency=2.941e-01	ks_quality_p_value=0.0152526	major_base=C	major_cov=20/16	major_frequency=7.059e-01	minor_base=T	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=2.941e-01	polymorphism_score=37.2	prediction=polymorphism	ref_cov=20/16	total_cov=26/26
RA	240	.	NC_000913	1429897	0	T	A	bias_e_value=200329	bias_p_value=0.0431589	consensus_reject=FREQUENCY_CUTOFF	consensus_score=54.9	fisher_strand_p_value=0.116719	frequency=2.917e-01	ks_quality_p_value=0.0624456	major_base=T	major_cov=19/15	major_frequency=7.083e-01	minor_base=A	minor_cov=4/10	new_cov=4/10	polymorphism_frequency=2.917e-01	polymorphism_score=40.6	prediction=polymorphism	ref_cov=19/15	total_cov=23/26
RA	241	.	NC_000913	1429906	0	G	A	bias_e_value=112928	bias_p_value=0.0243293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.8	fisher_strand_p_value=0.0688818	frequency=2.273e-01	ks_quality_p_value=0.0534856	major_base=G	major_cov=20/14	major_frequency=7.727e-01	minor_base=A	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=2.273e-01	polymorphism_score=23.1	prediction=polymorphism	ref_cov=20/14	total_cov=22/24
RA	242	.	NC_000913	1429917	0	A	G	bias_e_value=174365	bias_p_value=0.0375653	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.5	fisher_strand_p_value=0.0226933	frequency=2.045e-01	ks_quality_p_value=0.271903	major_base=A	major_cov=20/15	major_frequency=7.955e-01	minor_base=G	minor_cov=1/8	new_cov=1/8	polymorphism_frequency=2.045e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=20/15	total_cov=21/23
RA	243	.	NC_000913	1494388	0	C	.	bias_e_value=4641620	bias_p_value=0.999992	consensus_score=96.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996055	major_base=.	major_cov=11/11	major_frequency=9.565e-01	minor_base=C	minor_cov=0/1	new_cov=11/11	polymorphism_frequency=9.565e-01	polymorphism_score=-2.6	prediction=consensus	ref_cov=0/1	total_cov=11/12
RA	244	.	NC_000913	1517508	0	G	T	consensus_score=40.7	frequency=1	major_base=T	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	245	.	NC_000913	1576911	0	C	A	consensus_score=36.4	frequency=1	major_base=A	major_cov=6/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=6/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=6/7
RA	246	.	NC_000913	1634569	0	A	T	bias_e_value=3758910	bias_p_value=0.809822	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=3.1	fisher_strand_p_value=0.680172	frequency=5.217e-01	ks_quality_p_value=0.662506	major_base=T	major_cov=6/6	major_frequency=5.217e-01	minor_base=A	minor_cov=7/4	new_cov=6/6	polymorphism_frequency=5.217e-01	polymorphism_score=33.1	prediction=polymorphism	ref_cov=7/4	total_cov=13/10
RA	247	.	NC_000913	1634571	0	C	T	bias_e_value=3312770	bias_p_value=0.713706	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.0	fisher_strand_p_value=0.680172	frequency=5.217e-01	ks_quality_p_value=0.509374	major_base=T	major_cov=6/6	major_frequency=5.217e-01	minor_base=C	minor_cov=7/4	new_cov=6/6	polymorphism_frequency=5.217e-01	polymorphism_score=29.0	prediction=polymorphism	ref_cov=7/4	total_cov=13/10
RA	248	.	NC_000913	1634578	0	T	C	bias_e_value=4626400	bias_p_value=0.996715	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=5.2	fisher_strand_p_value=1	frequency=5.000e-01	ks_quality_p_value=0.920044	major_base=T	major_cov=7/5	major_frequency=5.000e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=5.000e-01	polymorphism_score=28.9	prediction=polymorphism	ref_cov=7/5	total_cov=13/11
RA	249	.	NC_000913	1634597	0	C	A	bias_e_value=966397	bias_p_value=0.208201	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.6	fisher_strand_p_value=1	frequency=5.185e-01	ks_quality_p_value=0.0528352	major_base=A	major_cov=8/6	major_frequency=5.185e-01	minor_base=C	minor_cov=7/6	new_cov=8/6	polymorphism_frequency=5.185e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=7/6	total_cov=15/12
RA	250	.	NC_000913	1634658	0	A	G	bias_e_value=4381870	bias_p_value=0.944032	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.9	fisher_strand_p_value=0.723478	frequency=5.312e-01	ks_quality_p_value=0.946346	major_base=G	major_cov=10/7	major_frequency=5.312e-01	minor_base=A	minor_cov=7/8	new_cov=10/7	polymorphism_frequency=5.312e-01	polymorphism_score=37.6	prediction=polymorphism	ref_cov=7/8	total_cov=17/15
RA	251	.	NC_000913	1634661	0	C	G	bias_e_value=3757140	bias_p_value=0.809441	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.5	fisher_strand_p_value=0.723478	frequency=5.312e-01	ks_quality_p_value=0.62219	major_base=G	major_cov=10/7	major_frequency=5.312e-01	minor_base=C	minor_cov=7/8	new_cov=10/7	polymorphism_frequency=5.312e-01	polymorphism_score=47.3	prediction=polymorphism	ref_cov=7/8	total_cov=17/15
RA	252	.	NC_000913	1634676	0	A	G	bias_e_value=3277900	bias_p_value=0.706192	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-3.8	fisher_strand_p_value=0.716292	frequency=5.862e-01	ks_quality_p_value=0.473886	major_base=G	major_cov=10/7	major_frequency=5.862e-01	minor_base=A	minor_cov=6/6	new_cov=10/7	polymorphism_frequency=5.862e-01	polymorphism_score=30.9	prediction=polymorphism	ref_cov=6/6	total_cov=16/13
RA	253	.	NC_000913	1634699	0	A	C	bias_e_value=3152260	bias_p_value=0.679124	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=2.7	fisher_strand_p_value=0.434083	frequency=6.400e-01	ks_quality_p_value=0.726149	major_base=C	major_cov=10/6	major_frequency=6.400e-01	minor_base=A	minor_cov=4/5	new_cov=10/6	polymorphism_frequency=6.400e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=4/5	total_cov=14/12
RA	254	.	NC_000913	1634724	0	G	A	bias_e_value=3385060	bias_p_value=0.729278	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.3	fisher_strand_p_value=0.361455	frequency=6.818e-01	ks_quality_p_value=1	major_base=A	major_cov=9/6	major_frequency=6.818e-01	minor_base=G	minor_cov=2/5	new_cov=9/6	polymorphism_frequency=6.818e-01	polymorphism_score=15.5	prediction=polymorphism	ref_cov=2/5	total_cov=11/11
RA	255	.	NC_000913	1634769	0	T	A	bias_e_value=726622	bias_p_value=0.156544	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.1	fisher_strand_p_value=0.0441176	frequency=7.059e-01	ks_quality_p_value=0.821948	major_base=A	major_cov=7/5	major_frequency=7.059e-01	minor_base=T	minor_cov=0/5	new_cov=7/5	polymorphism_frequency=7.059e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=0/5	total_cov=8/10
RA	256	.	NC_000913	1634799	0	A	G	bias_e_value=83534.5	bias_p_value=0.0179967	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.6	fisher_strand_p_value=0.0405594	frequency=5.333e-01	ks_quality_p_value=0.0637758	major_base=G	major_cov=6/2	major_frequency=5.333e-01	minor_base=A	minor_cov=1/6	new_cov=6/2	polymorphism_frequency=5.333e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=1/6	total_cov=7/8
RA	257	.	NC_000913	1635974	0	T	G	bias_e_value=3629700	bias_p_value=0.781985	consensus_reject=FREQUENCY_CUTOFF	consensus_score=19.2	fisher_strand_p_value=0.417284	frequency=3.913e-01	ks_quality_p_value=1	major_base=T	major_cov=5/9	major_frequency=6.087e-01	minor_base=G	minor_cov=5/4	new_cov=5/4	polymorphism_frequency=3.913e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=5/9	total_cov=12/13
RA	258	.	NC_000913	1636068	0	T	C	bias_e_value=4305300	bias_p_value=0.927536	consensus_reject=FREQUENCY_CUTOFF	consensus_score=21.1	fisher_strand_p_value=0.706825	frequency=4.444e-01	ks_quality_p_value=0.911565	major_base=T	major_cov=9/6	major_frequency=5.556e-01	minor_base=C	minor_cov=6/6	new_cov=6/6	polymorphism_frequency=4.444e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=9/6	total_cov=16/12
RA	259	.	NC_000913	1636074	0	C	T	bias_e_value=4637230	bias_p_value=0.999046	consensus_reject=FREQUENCY_CUTOFF	consensus_score=18.8	fisher_strand_p_value=1	frequency=4.643e-01	ks_quality_p_value=0.956646	major_base=C	major_cov=9/6	major_frequency=5.357e-01	minor_base=T	minor_cov=7/6	new_cov=7/6	polymorphism_frequency=4.643e-01	polymorphism_score=36.3	prediction=polymorphism	ref_cov=9/6	total_cov=16/12
RA	260	.	NC_000913	1636128	0	C	T	bias_e_value=3695370	bias_p_value=0.796132	consensus_reject=FREQUENCY_CUTOFF	consensus_score=30.7	fisher_strand_p_value=0.434083	frequency=3.600e-01	ks_quality_p_value=0.999445	major_base=C	major_cov=10/6	major_frequency=6.400e-01	minor_base=T	minor_cov=4/5	new_cov=4/5	polymorphism_frequency=3.600e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=10/6	total_cov=15/11
RA	261	.	NC_000913	1636484	0	C	T	bias_e_value=192112	bias_p_value=0.0413886	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.9	fisher_strand_p_value=0.0601399	frequency=4.375e-01	ks_quality_p_value=0.115243	major_base=C	major_cov=3/6	major_frequency=5.625e-01	minor_base=T	minor_cov=6/1	new_cov=6/1	polymorphism_frequency=4.375e-01	polymorphism_score=16.1	prediction=polymorphism	ref_cov=3/6	total_cov=9/7
RA	262	.	NC_000913	1636503	0	T	C	bias_e_value=1199130	bias_p_value=0.258341	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.1	fisher_strand_p_value=0.180916	frequency=5.789e-01	ks_quality_p_value=0.391489	major_base=C	major_cov=8/3	major_frequency=5.789e-01	minor_base=T	minor_cov=3/5	new_cov=8/3	polymorphism_frequency=5.789e-01	polymorphism_score=19.5	prediction=polymorphism	ref_cov=3/5	total_cov=11/8
RA	263	.	NC_000913	1652331	0	T	C	consensus_score=37.7	frequency=1	major_base=C	major_cov=4/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=4/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=4/7
RA	264	.	NC_000913	1667887	0	C	.	consensus_score=95.7	frequency=1	major_base=.	major_cov=13/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/10
RA	265	.	NC_000913	1744751	0	C	.	consensus_score=87.0	frequency=1	major_base=.	major_cov=9/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/11
RA	266	.	NC_000913	1978243	0	G	T	consensus_score=27.4	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	267	.	NC_000913	2003264	0	C	T	consensus_score=52.2	frequency=1	major_base=T	major_cov=7/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=7/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=7/9
RA	268	.	NC_000913	2032423	0	G	A	consensus_score=72.8	frequency=1	major_base=A	major_cov=13/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/9
RA	269	.	NC_000913	2173363	0	C	.	bias_e_value=4641650	bias_p_value=1	consensus_score=22.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=4/3	major_frequency=8.750e-01	minor_base=C	minor_cov=0/1	new_cov=4/3	polymorphism_frequency=8.750e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=0/1	total_cov=4/4
RA	270	.	NC_000913	2173364	0	C	.	bias_e_value=4447560	bias_p_value=0.958184	consensus_score=20.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.725112	major_base=.	major_cov=4/3	major_frequency=8.750e-01	minor_base=C	minor_cov=0/1	new_cov=4/3	polymorphism_frequency=8.750e-01	polymorphism_score=-1.9	prediction=consensus	ref_cov=0/1	total_cov=4/4
RA	271	.	NC_000913	2242121	0	A	G	consensus_score=66.7	frequency=1	major_base=G	major_cov=11/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/11
RA	272	.	NC_000913	2397444	0	G	A	consensus_score=117.3	frequency=1	major_base=A	major_cov=19/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/18
RA	273	.	NC_000913	2820156	0	T	G	consensus_score=112.3	frequency=1	major_base=G	major_cov=16/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=16/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=16/16
RA	274	.	NC_000913	3268970	0	A	G	consensus_score=36.7	frequency=1	major_base=G	major_cov=5/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/6
RA	275	.	NC_000913	3339943	0	C	G	bias_e_value=4640090	bias_p_value=0.999664	consensus_score=49.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.974195	major_base=G	major_cov=7/10	major_frequency=9.444e-01	minor_base=A	minor_cov=0/1	new_cov=7/10	polymorphism_frequency=9.444e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=7/11
RA	276	.	NC_000913	3486205	0	C	A	consensus_score=59.8	frequency=1	major_base=A	major_cov=8/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=8/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=8/10
RA	277	.	NC_000913	3560455	1	.	G	bias_e_value=3531630	bias_p_value=0.760856	consensus_score=67.2	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=0.905911	major_base=G	major_cov=9/13	major_frequency=9.565e-01	minor_base=.	minor_cov=1/0	new_cov=9/13	polymorphism_frequency=9.565e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/0	total_cov=10/13
RA	278	.	NC_000913	4146389	1	.	T	bias_e_value=3975820	bias_p_value=0.856553	consensus_score=51.3	fisher_strand_p_value=0.514706	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=4/11	major_frequency=8.824e-01	minor_base=.	minor_cov=1/1	new_cov=4/11	polymorphism_frequency=8.824e-01	polymorphism_score=-1.0	prediction=consensus	ref_cov=1/1	total_cov=5/12
RA	279	.	NC_000913	4296380	1	.	C	bias_e_value=4641550	bias_p_value=0.999979	consensus_score=52.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993485	major_base=C	major_cov=10/7	major_frequency=9.444e-01	minor_base=A	minor_cov=1/0	new_cov=10/7	polymorphism_frequency=9.444e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=12/7
RA	280	.	NC_000913	4296380	2	.	G	bias_e_value=3435110	bias_p_value=0.740061	consensus_score=51.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.372207	major_base=G	major_cov=11/7	major_frequency=9.474e-01	minor_base=.	minor_cov=1/0	new_cov=11/7	polymorphism_frequency=9.474e-01	polymorphism_score=-2.0	prediction=consensus	ref_cov=1/0	total_cov=12/7
RA	281	.	NC_000913	4542683	0	T	.	bias_e_value=3329340	bias_p_value=0.717275	consensus_reject=FREQUENCY_CUTOFF	consensus_score=37.4	fisher_strand_p_value=0.349845	frequency=5.000e-01	ks_quality_p_value=1	major_base=T	major_cov=5/5	major_frequency=5.000e-01	minor_base=.	minor_cov=2/8	new_cov=2/8	polymorphism_frequency=5.000e-01	polymorphism_score=37.0	prediction=polymorphism	ref_cov=5/5	total_cov=7/13
RA	282	.	NC_000913	4543024	0	C	G	consensus_score=52.4	frequency=1	major_base=G	major_cov=9/7	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/7	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/7
MC	283	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=22	right_inside_cov=0	right_outside_cov=22
MC	284	.	NC_000913	807347	807385	0	0	left_inside_cov=0	left_outside_cov=2	right_inside_cov=1	right_outside_cov=2
MC	285	.	NC_000913	1196371	1204088	0	0	left_inside_cov=1	left_outside_cov=2	right_inside_cov=1	right_outside_cov=2
MC	286	.	NC_000913	1204192	1211416	0	0	left_inside_cov=1	left_outside_cov=2	right_inside_cov=1	right_outside_cov=2
MC	287	.	NC_000913	1294035	1294175	0	0	left_inside_cov=1	left_outside_cov=11	right_inside_cov=0	right_outside_cov=10
MC	288	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=16	right_inside_cov=1	right_outside_cov=18
MC	289	.	NC_000913	1821790	1821871	0	0	left_inside_cov=1	left_outside_cov=2	right_inside_cov=1	right_outside_cov=2
MC	290	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=13	right_inside_cov=0	right_outside_cov=12
MC	291	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=25	right_inside_cov=1	right_outside_cov=28
MC	292	.	NC_000913	3423899	3424407	332	169	left_inside_cov=1	left_outside_cov=2	right_inside_cov=1	right_outside_cov=2
MC	293	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=29	right_inside_cov=0	right_outside_cov=29
JC	294	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=244	key=NC_000913__1__1__NC_000913__4641652__-1__0____251__251__0__0	max_left=244	max_left_minus=158	max_left_plus=244	max_min_left=106	max_min_left_minus=84	max_min_left_plus=106	max_min_right=116	max_min_right_minus=116	max_min_right_plus=46	max_pos_hash_score=490	max_right=203	max_right_minus=166	max_right_plus=203	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.69	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	295	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__57276__1__NC_000913__382590__-1__0____251__251__0__1	max_left=230	max_left_minus=224	max_left_plus=230	max_min_left=58	max_min_left_minus=58	max_min_left_plus=50	max_min_right=123	max_min_right_minus=116	max_min_right_plus=123	max_pos_hash_score=490	max_right=242	max_right_minus=222	max_right_plus=242	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.78	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	296	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__57280__-1__NC_000913__381260__1__0____251__251__0__1	max_left=235	max_left_minus=233	max_left_plus=235	max_min_left=111	max_min_left_minus=73	max_min_left_plus=111	max_min_right=121	max_min_right_minus=121	max_min_right_plus=91	max_pos_hash_score=490	max_right=247	max_right_minus=247	max_right_plus=178	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=25	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=27
JC	297	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=12	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__257907__-1__NC_000913__258676__1__8____251__251__0__0	max_left=221	max_left_minus=198	max_left_plus=221	max_min_left=98	max_min_left_minus=98	max_min_left_plus=78	max_min_right=118	max_min_right_minus=106	max_min_right_plus=118	max_pos_hash_score=474	max_right=240	max_right_minus=240	max_right_plus=233	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	298	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__279163__1__NC_000913__2666074__1__0____251__251__1__0	max_left=248	max_left_minus=179	max_left_plus=248	max_min_left=103	max_min_left_minus=63	max_min_left_plus=103	max_min_right=121	max_min_right_minus=121	max_min_right_plus=119	max_pos_hash_score=490	max_right=246	max_right_minus=246	max_right_plus=244	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.97	new_junction_read_count=21	polymorphism_frequency=1.000e+00	pos_hash_score=21	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	299	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=11	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____251__251__1__0	max_left=199	max_left_minus=175	max_left_plus=199	max_min_left=96	max_min_left_minus=96	max_min_left_plus=72	max_min_right=115	max_min_right_minus=115	max_min_right_plus=99	max_pos_hash_score=488	max_right=237	max_right_minus=237	max_right_plus=211	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.88	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=19
JC	300	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=244	key=NC_000913__381260__1__NC_000913__382183__-1__0____251__251__1__1	max_left=149	max_left_minus=147	max_left_plus=149	max_min_left=121	max_min_left_minus=120	max_min_left_plus=121	max_min_right=125	max_min_right_minus=125	max_min_right_plus=101	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=243	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=24	polymorphism_frequency=NA	pos_hash_score=23	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	301	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__381260__1__NC_000913__1105375__1__1____251__251__1__0	max_left=240	max_left_minus=229	max_left_plus=240	max_min_left=100	max_min_left_minus=100	max_min_left_plus=97	max_min_right=116	max_min_right_minus=88	max_min_right_plus=116	max_pos_hash_score=488	max_right=247	max_right_minus=247	max_right_plus=231	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.65	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	302	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=NA	junction_possible_overlap_registers=242	key=NC_000913__382177__1__NC_000913__382590__-1__2____251__251__1__1	max_left=221	max_left_minus=221	max_left_plus=190	max_min_left=114	max_min_left_minus=85	max_min_left_plus=114	max_min_right=120	max_min_right_minus=120	max_min_right_plus=85	max_pos_hash_score=486	max_right=234	max_right_minus=234	max_right_plus=211	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.93	new_junction_read_count=20	polymorphism_frequency=NA	pos_hash_score=19	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	303	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=3.432e-01	junction_possible_overlap_registers=242	key=NC_000913__566774__-1__NC_000913__568034__1__2____251__251__0__0	max_left=236	max_left_minus=217	max_left_plus=236	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=96	max_min_right_minus=96	max_min_right_plus=96	max_pos_hash_score=486	max_right=96	max_right_minus=96	max_right_plus=96	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.60	new_junction_read_count=13	polymorphism_frequency=3.432e-01	pos_hash_score=8	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.33	side_1_overlap=2	side_1_possible_overlap_registers=244	side_1_read_count=29	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=21	side_2_redundant=0	total_non_overlap_reads=8
JC	304	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__568449__1__NC_000913__1469240__-1__0____251__251__0__1	max_left=196	max_left_minus=193	max_left_plus=196	max_min_left=120	max_min_left_minus=120	max_min_left_plus=44	max_min_right=116	max_min_right_minus=116	max_min_right_plus=55	max_pos_hash_score=490	max_right=233	max_right_minus=233	max_right_plus=221	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.64	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	305	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__568454__-1__NC_000913__1467910__1__1____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=218	max_min_left=123	max_min_left_minus=123	max_min_left_plus=63	max_min_right=120	max_min_right_minus=89	max_min_right_plus=120	max_pos_hash_score=488	max_right=226	max_right_minus=226	max_right_plus=220	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.79	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=16	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	306	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____251__251__0__1	max_left=249	max_left_minus=249	max_left_plus=244	max_min_left=113	max_min_left_minus=113	max_min_left_plus=64	max_min_right=93	max_min_right_minus=93	max_min_right_plus=7	max_pos_hash_score=490	max_right=244	max_right_minus=244	max_right_plus=239	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.74	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=16
JC	307	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=6	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=234	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____251__251__0__0	max_left=230	max_left_minus=151	max_left_plus=230	max_min_left=117	max_min_left_minus=117	max_min_left_plus=40	max_min_right=113	max_min_right_minus=113	max_min_right_plus=47	max_pos_hash_score=470	max_right=211	max_right_minus=211	max_right_plus=201	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.48	new_junction_read_count=10	polymorphism_frequency=9.542e-01	pos_hash_score=10	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=10	side_1_possible_overlap_registers=244	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=234	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=10
JC	308	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=10	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=240	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____251__251__0__0	max_left=244	max_left_minus=209	max_left_plus=244	max_min_left=91	max_min_left_minus=91	max_min_left_plus=91	max_min_right=117	max_min_right_minus=117	max_min_right_plus=54	max_pos_hash_score=482	max_right=238	max_right_minus=224	max_right_plus=238	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.75	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	309	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____251__251__0__0	max_left=238	max_left_minus=185	max_left_plus=238	max_min_left=113	max_min_left_minus=21	max_min_left_plus=113	max_min_right=123	max_min_right_minus=70	max_min_right_plus=123	max_pos_hash_score=488	max_right=235	max_right_minus=229	max_right_plus=235	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.51	new_junction_read_count=11	polymorphism_frequency=9.168e-01	pos_hash_score=11	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=1	side_1_possible_overlap_registers=244	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=243	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=11
JC	310	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____251__251__1__0	max_left=210	max_left_minus=162	max_left_plus=210	max_min_left=125	max_min_left_minus=125	max_min_left_plus=125	max_min_right=121	max_min_right_minus=121	max_min_right_plus=40	max_pos_hash_score=490	max_right=212	max_right_minus=212	max_right_plus=212	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.60	new_junction_read_count=13	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=244	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	311	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=13	coverage_plus=11	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____251__251__1__0	max_left=246	max_left_minus=243	max_left_plus=246	max_min_left=119	max_min_left_minus=82	max_min_left_plus=119	max_min_right=123	max_min_right_minus=123	max_min_right_plus=91	max_pos_hash_score=486	max_right=238	max_right_minus=236	max_right_plus=238	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=237	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=24
JC	312	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____251__251__1__0	max_left=239	max_left_minus=233	max_left_plus=239	max_min_left=100	max_min_left_minus=99	max_min_left_plus=100	max_min_right=122	max_min_right_minus=122	max_min_right_plus=53	max_pos_hash_score=490	max_right=243	max_right_minus=152	max_right_plus=243	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=13
JC	313	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=9	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____251__251__1__0	max_left=237	max_left_minus=237	max_left_plus=208	max_min_left=121	max_min_left_minus=121	max_min_left_plus=97	max_min_right=123	max_min_right_minus=123	max_min_right_plus=79	max_pos_hash_score=488	max_right=243	max_right_minus=243	max_right_plus=212	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=17
JC	314	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____251__251__1__0	max_left=238	max_left_minus=238	max_left_plus=205	max_min_left=67	max_min_left_minus=0	max_min_left_plus=67	max_min_right=118	max_min_right_minus=40	max_min_right_plus=118	max_pos_hash_score=490	max_right=213	max_right_minus=40	max_right_plus=213	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.55	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=12
JC	315	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=6	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____251__251__0__1	max_left=241	max_left_minus=140	max_left_plus=241	max_min_left=86	max_min_left_minus=86	max_min_left_plus=74	max_min_right=111	max_min_right_minus=111	max_min_right_plus=87	max_pos_hash_score=490	max_right=243	max_right_minus=243	max_right_plus=235	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.55	new_junction_read_count=12	polymorphism_frequency=1.000e+00	pos_hash_score=12	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=12
JC	316	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=12	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2068941__1__NC_000913__2319850__1__0____251__251__1__0	max_left=242	max_left_minus=227	max_left_plus=242	max_min_left=114	max_min_left_minus=113	max_min_left_plus=114	max_min_right=122	max_min_right_minus=122	max_min_right_plus=105	max_pos_hash_score=490	max_right=242	max_right_minus=231	max_right_plus=242	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=22	polymorphism_frequency=1.000e+00	pos_hash_score=22	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=22
JC	317	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=7	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2269875__1__NC_000913__2288919__1__1____251__251__0__1	max_left=242	max_left_minus=242	max_left_plus=199	max_min_left=120	max_min_left_minus=82	max_min_left_plus=120	max_min_right=84	max_min_right_minus=84	max_min_right_plus=71	max_pos_hash_score=488	max_right=237	max_right_minus=170	max_right_plus=237	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.69	new_junction_read_count=15	polymorphism_frequency=1.000e+00	pos_hash_score=13	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=14
JC	318	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____251__251__0__1	max_left=194	max_left_minus=194	max_left_plus=137	max_min_left=92	max_min_left_minus=48	max_min_left_plus=92	max_min_right=123	max_min_right_minus=123	max_min_right_plus=114	max_pos_hash_score=490	max_right=245	max_right_minus=245	max_right_plus=241	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.46	new_junction_read_count=10	polymorphism_frequency=1.000e+00	pos_hash_score=10	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=240	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=10
JC	319	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=10	coverage_plus=4	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__2288919__1__NC_000913__4536235__1__1____251__251__1__0	max_left=231	max_left_minus=231	max_left_plus=151	max_min_left=122	max_min_left_minus=114	max_min_left_plus=122	max_min_right=95	max_min_right_minus=94	max_min_right_plus=95	max_pos_hash_score=488	max_right=203	max_right_minus=203	max_right_plus=201	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.65	new_junction_read_count=14	polymorphism_frequency=1.000e+00	pos_hash_score=14	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=14
JC	320	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____251__251__1__0	max_left=219	max_left_minus=169	max_left_plus=219	max_min_left=117	max_min_left_minus=117	max_min_left_plus=0	max_min_right=109	max_min_right_minus=109	max_min_right_plus=48	max_pos_hash_score=490	max_right=163	max_right_minus=163	max_right_plus=48	neg_log10_pos_hash_p_value=1.1	new_junction_coverage=0.37	new_junction_read_count=8	polymorphism_frequency=8.872e-01	pos_hash_score=8	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=240	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=8
JC	321	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=8	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____251__251__0__1	max_left=245	max_left_minus=217	max_left_plus=245	max_min_left=104	max_min_left_minus=104	max_min_left_plus=86	max_min_right=96	max_min_right_minus=96	max_min_right_plus=96	max_pos_hash_score=490	max_right=245	max_right_minus=220	max_right_plus=245	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.87	new_junction_read_count=19	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=18
JC	322	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=15	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=236	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____251__251__0__0	max_left=233	max_left_minus=233	max_left_plus=207	max_min_left=115	max_min_left_minus=113	max_min_left_plus=115	max_min_right=111	max_min_right_minus=111	max_min_right_plus=110	max_pos_hash_score=474	max_right=217	max_right_minus=207	max_right_plus=217	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=25	polymorphism_frequency=1.000e+00	pos_hash_score=24	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=236	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=25
JC	323	.	NC_000913	2996361	1	NC_000913	3264817	1	0	alignment_overlap=0	coverage_minus=14	coverage_plus=17	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__2996361__1__NC_000913__3264817__1__0____251__251__1__0	max_left=237	max_left_minus=232	max_left_plus=237	max_min_left=122	max_min_left_minus=122	max_min_left_plus=109	max_min_right=124	max_min_right_minus=124	max_min_right_plus=108	max_pos_hash_score=490	max_right=250	max_right_minus=224	max_right_plus=250	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.52	new_junction_read_count=33	polymorphism_frequency=1.000e+00	pos_hash_score=30	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=31
JC	324	.	NC_000913	3186096	1	NC_000913	3264821	-1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=9	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3186096__1__NC_000913__3264821__-1__0____251__251__1__0	max_left=239	max_left_minus=239	max_left_plus=203	max_min_left=113	max_min_left_minus=53	max_min_left_plus=113	max_min_right=119	max_min_right_minus=119	max_min_right_plus=105	max_pos_hash_score=490	max_right=213	max_right_minus=213	max_right_plus=175	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.06	new_junction_read_count=23	polymorphism_frequency=1.000e+00	pos_hash_score=18	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=239	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=21
JC	325	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=5	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____251__251__1__0	max_left=224	max_left_minus=224	max_left_plus=211	max_min_left=119	max_min_left_minus=119	max_min_left_plus=24	max_min_right=91	max_min_right_minus=65	max_min_right_plus=91	max_pos_hash_score=488	max_right=241	max_right_minus=131	max_right_plus=241	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.74	new_junction_read_count=16	polymorphism_frequency=1.000e+00	pos_hash_score=15	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=238	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=15
JC	326	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=14	coverage_plus=13	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=242	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____251__251__0__0	max_left=240	max_left_minus=240	max_left_plus=223	max_min_left=111	max_min_left_minus=111	max_min_left_plus=88	max_min_right=116	max_min_right_minus=116	max_min_right_plus=82	max_pos_hash_score=486	max_right=240	max_right_minus=223	max_right_plus=240	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.35	new_junction_read_count=29	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=244	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=242	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=27
JC	327	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=12	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____251__251__0__1	max_left=249	max_left_minus=159	max_left_plus=249	max_min_left=111	max_min_left_minus=101	max_min_left_plus=111	max_min_right=121	max_min_right_minus=121	max_min_right_plus=112	max_pos_hash_score=490	max_right=248	max_right_minus=248	max_right_plus=246	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=27	polymorphism_frequency=1.000e+00	pos_hash_score=26	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=26
JC	328	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=5	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4123922__1__NC_000913__4498181__1__1____251__251__0__1	max_left=232	max_left_minus=232	max_left_plus=145	max_min_left=114	max_min_left_minus=114	max_min_left_plus=79	max_min_right=105	max_min_right_minus=93	max_min_right_plus=105	max_pos_hash_score=488	max_right=212	max_right_minus=212	max_right_plus=195	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.79	new_junction_read_count=17	polymorphism_frequency=1.000e+00	pos_hash_score=17	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=17
JC	329	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=12	coverage_plus=7	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=243	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____251__251__0__1	max_left=230	max_left_minus=190	max_left_plus=230	max_min_left=122	max_min_left_minus=89	max_min_left_plus=122	max_min_right=120	max_min_right_minus=120	max_min_right_plus=53	max_pos_hash_score=488	max_right=229	max_right_minus=229	max_right_plus=186	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=238	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=19
JC	330	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4135180__1__NC_000913__4498181__1__0____251__251__0__1	max_left=220	max_left_minus=189	max_left_plus=220	max_min_left=125	max_min_left_minus=125	max_min_left_plus=97	max_min_right=121	max_min_right_minus=121	max_min_right_plus=120	max_pos_hash_score=490	max_right=242	max_right_minus=242	max_right_plus=228	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.92	new_junction_read_count=20	polymorphism_frequency=1.000e+00	pos_hash_score=19	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	331	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=9	coverage_plus=14	flanking_left=251	flanking_right=251	frequency=1	junction_possible_overlap_registers=244	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____251__251__0__1	max_left=245	max_left_minus=227	max_left_plus=245	max_min_left=105	max_min_left_minus=96	max_min_left_plus=105	max_min_right=122	max_min_right_minus=122	max_min_right_plus=113	max_pos_hash_score=490	max_right=221	max_right_minus=221	max_right_plus=220	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=24	polymorphism_frequency=1.000e+00	pos_hash_score=23	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=239	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	332	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=4	coverage_plus=3	flanking_left=251	flanking_right=251	frequency=4.047e-01	junction_possible_overlap_registers=235	key=NC_000913__4542682__1__NC_000913__4542987__1__9____251__251__0__0	max_left=192	max_left_minus=192	max_left_plus=192	max_min_left=61	max_min_left_minus=61	max_min_left_plus=0	max_min_right=82	max_min_right_minus=46	max_min_right_plus=82	max_pos_hash_score=472	max_right=212	max_right_minus=212	max_right_plus=82	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.33	new_junction_read_count=7	polymorphism_frequency=4.047e-01	pos_hash_score=7	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.51	side_1_overlap=9	side_1_possible_overlap_registers=244	side_1_read_count=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=7
JC	333	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=2	flanking_left=251	flanking_right=251	frequency=2.341e-01	junction_possible_overlap_registers=235	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____251__251__0__0	max_left=120	max_left_minus=120	max_left_plus=82	max_min_left=120	max_min_left_minus=120	max_min_left_plus=82	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=472	max_right=216	max_right_minus=122	max_right_plus=216	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.14	new_junction_read_count=3	polymorphism_frequency=2.341e-01	pos_hash_score=3	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.46	side_1_overlap=9	side_1_possible_overlap_registers=244	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.48	side_2_overlap=0	side_2_possible_overlap_registers=235	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=3
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UN	1755	.	NC_000913	1286920	1286922
UN	1756	.	NC_000913	1286925	1286936
UN	1757	.	NC_000913	1286939	1287007
UN	1758	.	NC_000913	1287009	1287011
UN	1759	.	NC_000913	1287013	1287017
UN	1760	.	NC_000913	1287019	1287021
UN	1761	.	NC_000913	1290672	1290672
UN	1762	.	NC_000913	1290675	1290690
UN	1763	.	NC_000913	1290696	1290696
UN	1764	.	NC_000913	1290703	1290703
UN	1765	.	NC_000913	1294035	1294175
UN	1766	.	NC_000913	1299499	1300697
UN	1767	.	NC_000913	1301220	1301220
UN	1768	.	NC_000913	1301229	1301230
UN	1769	.	NC_000913	1303073	1303084
UN	1770	.	NC_000913	1303434	1303434
UN	1771	.	NC_000913	1303436	1303436
UN	1772	.	NC_000913	1306783	1306783
UN	1773	.	NC_000913	1309695	1309696
UN	1774	.	NC_000913	1309704	1309707
UN	1775	.	NC_000913	1309709	1309711
UN	1776	.	NC_000913	1309713	1309715
UN	1777	.	NC_000913	1309724	1309724
UN	1778	.	NC_000913	1309727	1309729
UN	1779	.	NC_000913	1309732	1309733
UN	1780	.	NC_000913	1309750	1309750
UN	1781	.	NC_000913	1309752	1309753
UN	1782	.	NC_000913	1309755	1309755
UN	1783	.	NC_000913	1309762	1309762
UN	1784	.	NC_000913	1309765	1309774
UN	1785	.	NC_000913	1309790	1309790
UN	1786	.	NC_000913	1309798	1309798
UN	1787	.	NC_000913	1309801	1309801
UN	1788	.	NC_000913	1309804	1309804
UN	1789	.	NC_000913	1309806	1309807
UN	1790	.	NC_000913	1309810	1309810
UN	1791	.	NC_000913	1309814	1309814
UN	1792	.	NC_000913	1309820	1309820
UN	1793	.	NC_000913	1309822	1309822
UN	1794	.	NC_000913	1309830	1309832
UN	1795	.	NC_000913	1309834	1309834
UN	1796	.	NC_000913	1309843	1309864
UN	1797	.	NC_000913	1311119	1311119
UN	1798	.	NC_000913	1311163	1311163
UN	1799	.	NC_000913	1311165	1311282
UN	1800	.	NC_000913	1311285	1311287
UN	1801	.	NC_000913	1311290	1311291
UN	1802	.	NC_000913	1311293	1311294
UN	1803	.	NC_000913	1312439	1312439
UN	1804	.	NC_000913	1315314	1315314
UN	1805	.	NC_000913	1315319	1315319
UN	1806	.	NC_000913	1315322	1315322
UN	1807	.	NC_000913	1315867	1315867
UN	1808	.	NC_000913	1315869	1315870
UN	1809	.	NC_000913	1315877	1315877
UN	1810	.	NC_000913	1315880	1315880
UN	1811	.	NC_000913	1315884	1315884
UN	1812	.	NC_000913	1315888	1315888
UN	1813	.	NC_000913	1315891	1315891
UN	1814	.	NC_000913	1315897	1315897
UN	1815	.	NC_000913	1315904	1315904
UN	1816	.	NC_000913	1315909	1315909
UN	1817	.	NC_000913	1315912	1315912
UN	1818	.	NC_000913	1315920	1315920
UN	1819	.	NC_000913	1315927	1315927
UN	1820	.	NC_000913	1315930	1315930
UN	1821	.	NC_000913	1316217	1316217
UN	1822	.	NC_000913	1316237	1316239
UN	1823	.	NC_000913	1316247	1316248
UN	1824	.	NC_000913	1326057	1326057
UN	1825	.	NC_000913	1326059	1326059
UN	1826	.	NC_000913	1326061	1326061
UN	1827	.	NC_000913	1326066	1326066
UN	1828	.	NC_000913	1326070	1326070
UN	1829	.	NC_000913	1329838	1329840
UN	1830	.	NC_000913	1329843	1329846
UN	1831	.	NC_000913	1329848	1329850
UN	1832	.	NC_000913	1329855	1329855
UN	1833	.	NC_000913	1329857	1329857
UN	1834	.	NC_000913	1329860	1329861
UN	1835	.	NC_000913	1329863	1329868
UN	1836	.	NC_000913	1329870	1329872
UN	1837	.	NC_000913	1329875	1329894
UN	1838	.	NC_000913	1329896	1329905
UN	1839	.	NC_000913	1329921	1329921
UN	1840	.	NC_000913	1333634	1333715
UN	1841	.	NC_000913	1333718	1333718
UN	1842	.	NC_000913	1333721	1333722
UN	1843	.	NC_000913	1333724	1333726
UN	1844	.	NC_000913	1333728	1333729
UN	1845	.	NC_000913	1333731	1333731
UN	1846	.	NC_000913	1333745	1333745
UN	1847	.	NC_000913	1333756	1333756
UN	1848	.	NC_000913	1335035	1335035
UN	1849	.	NC_000913	1335058	1335058
UN	1850	.	NC_000913	1335069	1335069
UN	1851	.	NC_000913	1335073	1335073
UN	1852	.	NC_000913	1335076	1335076
UN	1853	.	NC_000913	1335117	1335117
UN	1854	.	NC_000913	1335141	1335141
UN	1855	.	NC_000913	1335151	1335151
UN	1856	.	NC_000913	1335159	1335161
UN	1857	.	NC_000913	1335181	1335181
UN	1858	.	NC_000913	1335190	1335191
UN	1859	.	NC_000913	1335197	1335197
UN	1860	.	NC_000913	1335201	1335201
UN	1861	.	NC_000913	1335210	1335210
UN	1862	.	NC_000913	1335212	1335254
UN	1863	.	NC_000913	1335260	1335261
UN	1864	.	NC_000913	1335268	1335268
UN	1865	.	NC_000913	1351146	1351146
UN	1866	.	NC_000913	1351148	1351148
UN	1867	.	NC_000913	1351151	1351298
UN	1868	.	NC_000913	1351300	1351302
UN	1869	.	NC_000913	1351304	1351304
UN	1870	.	NC_000913	1351310	1351310
UN	1871	.	NC_000913	1351317	1351317
UN	1872	.	NC_000913	1351325	1351326
UN	1873	.	NC_000913	1351328	1351335
UN	1874	.	NC_000913	1351338	1351338
UN	1875	.	NC_000913	1351340	1351340
UN	1876	.	NC_000913	1351354	1351354
UN	1877	.	NC_000913	1351368	1351368
UN	1878	.	NC_000913	1351370	1351370
UN	1879	.	NC_000913	1351375	1351375
UN	1880	.	NC_000913	1351378	1351378
UN	1881	.	NC_000913	1351395	1351395
UN	1882	.	NC_000913	1359154	1359154
UN	1883	.	NC_000913	1370524	1370524
UN	1884	.	NC_000913	1370526	1370527
UN	1885	.	NC_000913	1370533	1370533
UN	1886	.	NC_000913	1370536	1370537
UN	1887	.	NC_000913	1370545	1370546
UN	1888	.	NC_000913	1370548	1370548
UN	1889	.	NC_000913	1370555	1370559
UN	1890	.	NC_000913	1370569	1370569
UN	1891	.	NC_000913	1370599	1370599
UN	1892	.	NC_000913	1370604	1370604
UN	1893	.	NC_000913	1370612	1370619
UN	1894	.	NC_000913	1370626	1370629
UN	1895	.	NC_000913	1370636	1370636
UN	1896	.	NC_000913	1383124	1383125
UN	1897	.	NC_000913	1383132	1383132
UN	1898	.	NC_000913	1383135	1383135
UN	1899	.	NC_000913	1383151	1383151
UN	1900	.	NC_000913	1383154	1383154
UN	1901	.	NC_000913	1383168	1383169
UN	1902	.	NC_000913	1383171	1383173
UN	1903	.	NC_000913	1383180	1383180
UN	1904	.	NC_000913	1383591	1383591
UN	1905	.	NC_000913	1383722	1383722
UN	1906	.	NC_000913	1390824	1390824
UN	1907	.	NC_000913	1396103	1396103
UN	1908	.	NC_000913	1396111	1396111
UN	1909	.	NC_000913	1396113	1396113
UN	1910	.	NC_000913	1396117	1396117
UN	1911	.	NC_000913	1396124	1396125
UN	1912	.	NC_000913	1396131	1396131
UN	1913	.	NC_000913	1396133	1396133
UN	1914	.	NC_000913	1396142	1397087
UN	1915	.	NC_000913	1397097	1397097
UN	1916	.	NC_000913	1397100	1397100
UN	1917	.	NC_000913	1397108	1397108
UN	1918	.	NC_000913	1397110	1397110
UN	1919	.	NC_000913	1405803	1405807
UN	1920	.	NC_000913	1405812	1405813
UN	1921	.	NC_000913	1405815	1405850
UN	1922	.	NC_000913	1405852	1405853
UN	1923	.	NC_000913	1407541	1407541
UN	1924	.	NC_000913	1407554	1407554
UN	1925	.	NC_000913	1407556	1407556
UN	1926	.	NC_000913	1407576	1407576
UN	1927	.	NC_000913	1407589	1407589
UN	1928	.	NC_000913	1407601	1407605
UN	1929	.	NC_000913	1407607	1407609
UN	1930	.	NC_000913	1407611	1407611
UN	1931	.	NC_000913	1407613	1407617
UN	1932	.	NC_000913	1407619	1407641
UN	1933	.	NC_000913	1407649	1407653
UN	1934	.	NC_000913	1407657	1407658
UN	1935	.	NC_000913	1407665	1407667
UN	1936	.	NC_000913	1407669	1407669
UN	1937	.	NC_000913	1407675	1407676
UN	1938	.	NC_000913	1407678	1407680
UN	1939	.	NC_000913	1407682	1407683
UN	1940	.	NC_000913	1407687	1407687
UN	1941	.	NC_000913	1407696	1407696
UN	1942	.	NC_000913	1413641	1413641
UN	1943	.	NC_000913	1413648	1413648
UN	1944	.	NC_000913	1413652	1413652
UN	1945	.	NC_000913	1413686	1413686
UN	1946	.	NC_000913	1413693	1413693
UN	1947	.	NC_000913	1413695	1413695
UN	1948	.	NC_000913	1413700	1413700
UN	1949	.	NC_000913	1413705	1413705
UN	1950	.	NC_000913	1413709	1413709
UN	1951	.	NC_000913	1413724	1413724
UN	1952	.	NC_000913	1413728	1413728
UN	1953	.	NC_000913	1413730	1413730
UN	1954	.	NC_000913	1413732	1413732
UN	1955	.	NC_000913	1413734	1413734
UN	1956	.	NC_000913	1413736	1413737
UN	1957	.	NC_000913	1413741	1413745
UN	1958	.	NC_000913	1413748	1413748
UN	1959	.	NC_000913	1413770	1413771
UN	1960	.	NC_000913	1413774	1413774
UN	1961	.	NC_000913	1413777	1413777
UN	1962	.	NC_000913	1413785	1413785
UN	1963	.	NC_000913	1413790	1413790
UN	1964	.	NC_000913	1413792	1413800
UN	1965	.	NC_000913	1413802	1413803
UN	1966	.	NC_000913	1415538	1415539
UN	1967	.	NC_000913	1415542	1415543
UN	1968	.	NC_000913	1415545	1415560
UN	1969	.	NC_000913	1415564	1415564
UN	1970	.	NC_000913	1419515	1419515
UN	1971	.	NC_000913	1419601	1419601
UN	1972	.	NC_000913	1419603	1419603
UN	1973	.	NC_000913	1419609	1419609
UN	1974	.	NC_000913	1421665	1421665
UN	1975	.	NC_000913	1421687	1421687
UN	1976	.	NC_000913	1421703	1421703
UN	1977	.	NC_000913	1421707	1421708
UN	1978	.	NC_000913	1421711	1421711
UN	1979	.	NC_000913	1421716	1421716
UN	1980	.	NC_000913	1421718	1421733
UN	1981	.	NC_000913	1421738	1421739
UN	1982	.	NC_000913	1421743	1421743
UN	1983	.	NC_000913	1421749	1421752
UN	1984	.	NC_000913	1421757	1421760
UN	1985	.	NC_000913	1421762	1421763
UN	1986	.	NC_000913	1421775	1421775
UN	1987	.	NC_000913	1424008	1424009
UN	1988	.	NC_000913	1424015	1424016
UN	1989	.	NC_000913	1424019	1424020
UN	1990	.	NC_000913	1424024	1424025
UN	1991	.	NC_000913	1424027	1424029
UN	1992	.	NC_000913	1424031	1424031
UN	1993	.	NC_000913	1424035	1424079
UN	1994	.	NC_000913	1424081	1424087
UN	1995	.	NC_000913	1424089	1424103
UN	1996	.	NC_000913	1424105	1424106
UN	1997	.	NC_000913	1424110	1424110
UN	1998	.	NC_000913	1424121	1424121
UN	1999	.	NC_000913	1424129	1424129
UN	2000	.	NC_000913	1424131	1424131
UN	2001	.	NC_000913	1424139	1424139
UN	2002	.	NC_000913	1424147	1424147
UN	2003	.	NC_000913	1424230	1424230
UN	2004	.	NC_000913	1424240	1424240
UN	2005	.	NC_000913	1424659	1424659
UN	2006	.	NC_000913	1424738	1424738
UN	2007	.	NC_000913	1424747	1424747
UN	2008	.	NC_000913	1424918	1424918
UN	2009	.	NC_000913	1425423	1425423
UN	2010	.	NC_000913	1429111	1429111
UN	2011	.	NC_000913	1429114	1429114
UN	2012	.	NC_000913	1429126	1429126
UN	2013	.	NC_000913	1429128	1429128
UN	2014	.	NC_000913	1429160	1429160
UN	2015	.	NC_000913	1429164	1429164
UN	2016	.	NC_000913	1429171	1429171
UN	2017	.	NC_000913	1429204	1429204
UN	2018	.	NC_000913	1429207	1429207
UN	2019	.	NC_000913	1429225	1429225
UN	2020	.	NC_000913	1429228	1429228
UN	2021	.	NC_000913	1429231	1429231
UN	2022	.	NC_000913	1429235	1429236
UN	2023	.	NC_000913	1429240	1429240
UN	2024	.	NC_000913	1429243	1429243
UN	2025	.	NC_000913	1429246	1429246
UN	2026	.	NC_000913	1429252	1429252
UN	2027	.	NC_000913	1429255	1429255
UN	2028	.	NC_000913	1429258	1429258
UN	2029	.	NC_000913	1429261	1429261
UN	2030	.	NC_000913	1429273	1429273
UN	2031	.	NC_000913	1429404	1429404
UN	2032	.	NC_000913	1429416	1429416
UN	2033	.	NC_000913	1429425	1429425
UN	2034	.	NC_000913	1429714	1429714
UN	2035	.	NC_000913	1429724	1429724
UN	2036	.	NC_000913	1429735	1429735
UN	2037	.	NC_000913	1429741	1429741
UN	2038	.	NC_000913	1429744	1429744
UN	2039	.	NC_000913	1429747	1429747
UN	2040	.	NC_000913	1429750	1429750
UN	2041	.	NC_000913	1429753	1429753
UN	2042	.	NC_000913	1429756	1429756
UN	2043	.	NC_000913	1429759	1429759
UN	2044	.	NC_000913	1429767	1429767
UN	2045	.	NC_000913	1432480	1432480
UN	2046	.	NC_000913	1432821	1432822
UN	2047	.	NC_000913	1432824	1433009
UN	2048	.	NC_000913	1433838	1433838
UN	2049	.	NC_000913	1433843	1433843
UN	2050	.	NC_000913	1433845	1433966
UN	2051	.	NC_000913	1433974	1433976
UN	2052	.	NC_000913	1433982	1433982
UN	2053	.	NC_000913	1433989	1433989
UN	2054	.	NC_000913	1433993	1433995
UN	2055	.	NC_000913	1434002	1434002
UN	2056	.	NC_000913	1434010	1434010
UN	2057	.	NC_000913	1434013	1434014
UN	2058	.	NC_000913	1434128	1434128
UN	2059	.	NC_000913	1434130	1434132
UN	2060	.	NC_000913	1434135	1434135
UN	2061	.	NC_000913	1434141	1434142
UN	2062	.	NC_000913	1434145	1434147
UN	2063	.	NC_000913	1434150	1434151
UN	2064	.	NC_000913	1434443	1434443
UN	2065	.	NC_000913	1434445	1434445
UN	2066	.	NC_000913	1434447	1434447
UN	2067	.	NC_000913	1434449	1434450
UN	2068	.	NC_000913	1434453	1434453
UN	2069	.	NC_000913	1434458	1434458
UN	2070	.	NC_000913	1434464	1434465
UN	2071	.	NC_000913	1434467	1434468
UN	2072	.	NC_000913	1434470	1434475
UN	2073	.	NC_000913	1434480	1434480
UN	2074	.	NC_000913	1434482	1434484
UN	2075	.	NC_000913	1434486	1434493
UN	2076	.	NC_000913	1434495	1434496
UN	2077	.	NC_000913	1434498	1434500
UN	2078	.	NC_000913	1434502	1434538
UN	2079	.	NC_000913	1434545	1434549
UN	2080	.	NC_000913	1434551	1434551
UN	2081	.	NC_000913	1434558	1434558
UN	2082	.	NC_000913	1434561	1434561
UN	2083	.	NC_000913	1434564	1434567
UN	2084	.	NC_000913	1434573	1434573
UN	2085	.	NC_000913	1434584	1434584
UN	2086	.	NC_000913	1434591	1434591
UN	2087	.	NC_000913	1434596	1434617
UN	2088	.	NC_000913	1434619	1434619
UN	2089	.	NC_000913	1434623	1434623
UN	2090	.	NC_000913	1434627	1434627
UN	2091	.	NC_000913	1434646	1434646
UN	2092	.	NC_000913	1434648	1434650
UN	2093	.	NC_000913	1434865	1434865
UN	2094	.	NC_000913	1435241	1435242
UN	2095	.	NC_000913	1435246	1435246
UN	2096	.	NC_000913	1435249	1435249
UN	2097	.	NC_000913	1435254	1435254
UN	2098	.	NC_000913	1435351	1435351
UN	2099	.	NC_000913	1441587	1441587
UN	2100	.	NC_000913	1441591	1441591
UN	2101	.	NC_000913	1441596	1441596
UN	2102	.	NC_000913	1441601	1441601
UN	2103	.	NC_000913	1441605	1441605
UN	2104	.	NC_000913	1450896	1450896
UN	2105	.	NC_000913	1450916	1450916
UN	2106	.	NC_000913	1450985	1450985
UN	2107	.	NC_000913	1450988	1450988
UN	2108	.	NC_000913	1451439	1451439
UN	2109	.	NC_000913	1451442	1451443
UN	2110	.	NC_000913	1453513	1453515
UN	2111	.	NC_000913	1468070	1468070
UN	2112	.	NC_000913	1468073	1468073
UN	2113	.	NC_000913	1468076	1468079
UN	2114	.	NC_000913	1468082	1468084
UN	2115	.	NC_000913	1468087	1468087
UN	2116	.	NC_000913	1468090	1468090
UN	2117	.	NC_000913	1468092	1469031
UN	2118	.	NC_000913	1469431	1469431
UN	2119	.	NC_000913	1469433	1470355
UN	2120	.	NC_000913	1470357	1470360
UN	2121	.	NC_000913	1470365	1470369
UN	2122	.	NC_000913	1470373	1470373
UN	2123	.	NC_000913	1470375	1470375
UN	2124	.	NC_000913	1471184	1471184
UN	2125	.	NC_000913	1471196	1471196
UN	2126	.	NC_000913	1471198	1471198
UN	2127	.	NC_000913	1471285	1471285
UN	2128	.	NC_000913	1471323	1471324
UN	2129	.	NC_000913	1475046	1475047
UN	2130	.	NC_000913	1475058	1475058
UN	2131	.	NC_000913	1475063	1475207
UN	2132	.	NC_000913	1475209	1475220
UN	2133	.	NC_000913	1475222	1475255
UN	2134	.	NC_000913	1475262	1475262
UN	2135	.	NC_000913	1475311	1475311
UN	2136	.	NC_000913	1475344	1475344
UN	2137	.	NC_000913	1477116	1477116
UN	2138	.	NC_000913	1478199	1478199
UN	2139	.	NC_000913	1478203	1478211
UN	2140	.	NC_000913	1478213	1478213
UN	2141	.	NC_000913	1478220	1478220
UN	2142	.	NC_000913	1478227	1478227
UN	2143	.	NC_000913	1478233	1478234
UN	2144	.	NC_000913	1478238	1478240
UN	2145	.	NC_000913	1478243	1478245
UN	2146	.	NC_000913	1478247	1478249
UN	2147	.	NC_000913	1478251	1478256
UN	2148	.	NC_000913	1478259	1478262
UN	2149	.	NC_000913	1478276	1478276
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UN	5257	.	NC_000913	4497872	4497872
UN	5258	.	NC_000913	4497878	4497878
UN	5259	.	NC_000913	4497883	4497883
UN	5260	.	NC_000913	4497887	4497887
UN	5261	.	NC_000913	4497889	4497890
UN	5262	.	NC_000913	4497893	4497893
UN	5263	.	NC_000913	4497901	4497901
UN	5264	.	NC_000913	4497906	4497906
UN	5265	.	NC_000913	4497914	4497915
UN	5266	.	NC_000913	4497917	4497917
UN	5267	.	NC_000913	4498331	4499324
UN	5268	.	NC_000913	4499326	4499332
UN	5269	.	NC_000913	4499334	4499339
UN	5270	.	NC_000913	4499341	4499341
UN	5271	.	NC_000913	4499345	4499345
UN	5272	.	NC_000913	4499349	4499350
UN	5273	.	NC_000913	4499352	4499352
UN	5274	.	NC_000913	4502674	4502674
UN	5275	.	NC_000913	4502752	4502752
UN	5276	.	NC_000913	4502756	4502756
UN	5277	.	NC_000913	4502765	4502765
UN	5278	.	NC_000913	4504334	4504334
UN	5279	.	NC_000913	4504341	4504341
UN	5280	.	NC_000913	4504349	4504349
UN	5281	.	NC_000913	4504364	4504364
UN	5282	.	NC_000913	4504647	4504647
UN	5283	.	NC_000913	4504657	4504657
UN	5284	.	NC_000913	4504693	4504693
UN	5285	.	NC_000913	4504729	4504729
UN	5286	.	NC_000913	4504731	4504732
UN	5287	.	NC_000913	4504738	4504738
UN	5288	.	NC_000913	4505168	4505168
UN	5289	.	NC_000913	4505185	4505185
UN	5290	.	NC_000913	4505192	4505192
UN	5291	.	NC_000913	4505203	4505203
UN	5292	.	NC_000913	4505234	4505276
UN	5293	.	NC_000913	4505278	4505278
UN	5294	.	NC_000913	4505280	4505281
UN	5295	.	NC_000913	4505283	4505283
UN	5296	.	NC_000913	4505288	4505289
UN	5297	.	NC_000913	4505294	4505294
UN	5298	.	NC_000913	4505589	4505589
UN	5299	.	NC_000913	4505591	4505591
UN	5300	.	NC_000913	4505594	4505594
UN	5301	.	NC_000913	4505614	4505614
UN	5302	.	NC_000913	4505627	4505627
UN	5303	.	NC_000913	4505637	4505638
UN	5304	.	NC_000913	4505643	4505643
UN	5305	.	NC_000913	4505645	4505645
UN	5306	.	NC_000913	4505648	4505648
UN	5307	.	NC_000913	4505655	4505661
UN	5308	.	NC_000913	4505673	4505673
UN	5309	.	NC_000913	4505680	4505680
UN	5310	.	NC_000913	4505682	4505682
UN	5311	.	NC_000913	4505686	4505686
UN	5312	.	NC_000913	4505689	4505689
UN	5313	.	NC_000913	4505699	4505700
UN	5314	.	NC_000913	4505702	4505702
UN	5315	.	NC_000913	4505756	4505756
UN	5316	.	NC_000913	4506026	4506027
UN	5317	.	NC_000913	4506031	4506031
UN	5318	.	NC_000913	4506037	4506062
UN	5319	.	NC_000913	4506065	4506067
UN	5320	.	NC_000913	4507537	4507539
UN	5321	.	NC_000913	4507542	4508495
UN	5322	.	NC_000913	4508497	4508500
UN	5323	.	NC_000913	4508502	4508504
UN	5324	.	NC_000913	4508507	4508509
UN	5325	.	NC_000913	4508511	4508513
UN	5326	.	NC_000913	4508516	4508525
UN	5327	.	NC_000913	4508527	4508531
UN	5328	.	NC_000913	4508541	4508541
UN	5329	.	NC_000913	4508561	4508561
UN	5330	.	NC_000913	4521380	4521380
UN	5331	.	NC_000913	4521383	4521383
UN	5332	.	NC_000913	4521385	4521385
UN	5333	.	NC_000913	4521409	4521409
UN	5334	.	NC_000913	4521412	4521412
UN	5335	.	NC_000913	4538098	4538098
UN	5336	.	NC_000913	4538102	4538103
UN	5337	.	NC_000913	4538184	4538210
UN	5338	.	NC_000913	4538212	4538212
UN	5339	.	NC_000913	4538214	4538215
UN	5340	.	NC_000913	4538218	4538218
UN	5341	.	NC_000913	4538223	4538223
UN	5342	.	NC_000913	4538227	4538227
UN	5343	.	NC_000913	4538229	4538229
UN	5344	.	NC_000913	4538235	4538235
UN	5345	.	NC_000913	4555593	4555593
UN	5346	.	NC_000913	4555624	4555626
UN	5347	.	NC_000913	4555630	4555631
UN	5348	.	NC_000913	4555634	4555634
UN	5349	.	NC_000913	4555650	4555650
UN	5350	.	NC_000913	4555656	4555656
UN	5351	.	NC_000913	4556620	4556620
UN	5352	.	NC_000913	4561163	4561163
UN	5353	.	NC_000913	4561165	4561165
UN	5354	.	NC_000913	4561168	4561169
UN	5355	.	NC_000913	4561171	4561173
UN	5356	.	NC_000913	4561176	4561176
UN	5357	.	NC_000913	4561182	4561182
UN	5358	.	NC_000913	4561215	4561215
UN	5359	.	NC_000913	4565866	4565866
UN	5360	.	NC_000913	4565890	4565890
UN	5361	.	NC_000913	4565893	4565893
UN	5362	.	NC_000913	4565895	4565900
UN	5363	.	NC_000913	4565904	4565904
UN	5364	.	NC_000913	4565906	4565906
UN	5365	.	NC_000913	4565910	4565911
UN	5366	.	NC_000913	4565930	4565930
UN	5367	.	NC_000913	4565952	4565952
UN	5368	.	NC_000913	4571078	4571078
UN	5369	.	NC_000913	4571084	4571085
UN	5370	.	NC_000913	4571096	4571096
UN	5371	.	NC_000913	4571098	4571098
UN	5372	.	NC_000913	4577447	4577448
UN	5373	.	NC_000913	4577454	4577454
UN	5374	.	NC_000913	4577456	4577457
UN	5375	.	NC_000913	4577460	4577460
UN	5376	.	NC_000913	4580642	4580642
UN	5377	.	NC_000913	4580673	4580673
UN	5378	.	NC_000913	4580675	4580675
UN	5379	.	NC_000913	4581201	4581201
UN	5380	.	NC_000913	4581205	4581205
UN	5381	.	NC_000913	4581222	4581223
UN	5382	.	NC_000913	4581227	4581227
UN	5383	.	NC_000913	4582499	4582499
UN	5384	.	NC_000913	4594599	4594599
UN	5385	.	NC_000913	4603298	4603299
UN	5386	.	NC_000913	4603306	4603306
UN	5387	.	NC_000913	4603308	4603308
UN	5388	.	NC_000913	4603311	4603311
UN	5389	.	NC_000913	4603324	4603324
UN	5390	.	NC_000913	4603340	4603341
UN	5391	.	NC_000913	4603343	4603343
UN	5392	.	NC_000913	4603345	4603345
UN	5393	.	NC_000913	4603347	4603347
UN	5394	.	NC_000913	4603349	4603350
UN	5395	.	NC_000913	4603353	4603353
UN	5396	.	NC_000913	4603355	4603374
UN	5397	.	NC_000913	4603381	4603381
UN	5398	.	NC_000913	4606009	4606012
UN	5399	.	NC_000913	4606014	4606063
UN	5400	.	NC_000913	4606066	4606067
UN	5401	.	NC_000913	4606069	4606075
UN	5402	.	NC_000913	4606082	4606083
UN	5403	.	NC_000913	4606085	4606085
UN	5404	.	NC_000913	4606092	4606093
UN	5405	.	NC_000913	4606095	4606095
UN	5406	.	NC_000913	4606097	4606097
UN	5407	.	NC_000913	4606099	4606102
UN	5408	.	NC_000913	4606104	4606104
UN	5409	.	NC_000913	4606106	4606106
UN	5410	.	NC_000913	4606117	4606117
UN	5411	.	NC_000913	4634967	4634967
UN	5412	.	NC_000913	4634971	4634973
UN	5413	.	NC_000913	4634978	4634978
UN	5414	.	NC_000913	4634981	4634981
UN	5415	.	NC_000913	4634983	4634983
UN	5416	.	NC_000913	4635003	4635003
UN	5417	.	NC_000913	4635007	4635008
UN	5418	.	NC_000913	4635011	4635011
UN	5419	.	NC_000913	4635014	4635014
UN	5420	.	NC_000913	4635016	4635016
UN	5421	.	NC_000913	4635018	4635018
UN	5422	.	NC_000913	4635026	4635026
UN	5423	.	NC_000913	4635030	4635030
UN	5424	.	NC_000913	4635032	4635033
UN	5425	.	NC_000913	4635046	4635046
UN	5426	.	NC_000913	4635052	4635052
UN	5427	.	NC_000913	4635060	4635060
UN	5428	.	NC_000913	4635066	4635066
UN	5429	.	NC_000913	4635069	4635069
UN	5430	.	NC_000913	4635072	4635072
UN	5431	.	NC_000913	4635078	4635078
UN	5432	.	NC_000913	4635080	4635080
UN	5433	.	NC_000913	4641429	4641429
UN	5434	.	NC_000913	4641436	4641436
UN	5435	.	NC_000913	4641450	4641450