| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2269876 = | 0 (0.000) | 20 (0.730) | 20/488 | 0.4 | 100% | intergenic (+309/‑103) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | 2288919 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 2269879 | 0 (0.000) | 18 (0.650) | 17/490 | 0.6 | 100% | intergenic (+312/‑100) | lpxT/mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
GATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAC > NC_000913/2288681‑2289161 | aaTAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTGTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAAt < 2:100920/250‑1 (MQ=255) tAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTAAAACAGCCGGATTTTTTTTTCTATGAAAACACCCTCCACTGTCTCACCATACTCAAAAGTTTATGCCAAAGCTATTGGGGGATAAAAGGAAGGGGCGGATAAACGGGGCAAtt > 2:229028/1‑251 (MQ=255) tAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAt < 1:207979/250‑1 (MQ=255) aGTATTCTGCGGCGCCATTCATTTCAATGTACGGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAGCTGTCTCGCCATACTGAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAGTTCTTCTCgg < 2:248753/251‑1 (MQ=255) tcggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTTCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACt < 2:2684/248‑1 (MQ=255) tACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCAAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAACAGATGATTCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTTGGCT‑GACTCAGTCCTTTCATTTGTTCAT‑Gtt > 1:177375/1‑251 (MQ=255) cccTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCCTTTCATTTCTTCAT‑GTTTGAGCCgg > 1:147424/1‑250 (MQ=255) attattACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCGGGTTATCTTTTTTTCCGACAACTCCTTCCACTCTCTCACCCTTCCCCACAGTTGATGCCCATGCTATGGGGGGAAGTTAGTGAGGAGCGGATAAAAGGGGAAATTCTTTTCGGCTAGA‑TCAGTCATTTCATTTCTTCATTGTTTG‑GGCGATTTTTTCTCCCGTacatt > 1:148559/1‑247 (MQ=255) tattaCTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGc < 1:184746/250‑1 (MQ=255) cttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCTTCTTATTGGCGGTCCCCTAAACCAGCCGGTTATATTTTTTCAAGGCAACAAACTACACTGTTTCACCATACTCAACAGTTGATGCCCATGCGATGGGTGAAAATAAAGAAAGAGCGAATAAGCGGGGGAGTTCTTCTCGGCA‑GACTCCGTCATTTTCTTTCTTTTT‑GTTTTTGCCGCTTTTTTCTCCCGCAAATGCCTTGa > 2:170042/1‑250 (MQ=255) ttacACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTTCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTTATGCCAATGCTATTGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTTTCGGCT‑GAGTCAGACATTTTATTTCTTCAT‑GCTTGAGCCGATTTTTTCTCCCGAAAATTCCTTgcat > 1:48859/1‑248 (MQ=37) aTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTTCCATAAACCAGCTGGATATCTTTTTTCAGGACCACACCATCAACTGTCTCACCCTACTCAACAGGTTATGCCAATGCTATGGGTGAATATAAGGGAGGGGCGAATAAGCGGGGAAATTCTTCTTGGCT‑GACTCAGTCCATTCCTTTTTTCAT‑GGTTTAGGCGTGTTTTTTTCCCGTAAATGCCTTGAAT‑CCGCCTAtt > 1:24983/1‑251 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGGTATCTTTTTTCCGGACAACACCATCAACTGTCTCACCATACTCAACAGTTTATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GGCTCAGTCATTTCATTTTTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTAttt > 1:205828/1‑248 (MQ=255) tctcCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCCTTAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGGGCGAATAAGCGGGGGAATTCTTCTCGGCT‑GACTCCGTCATTTCATTTCTTCAT‑GTTTGCGCCGATTTTTTCTCCCGTAAATGCCTTTAATACA‑CCTATTTTAAACCGTT‑CTTCGcc > 2:66651/1‑251 (MQ=255) ttgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATATTTTTCCAGGACAACACCATCAAATGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGAATATAAGGAAGGGGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTTAGCCGATTTTTTTTCCCGTAAATGCCTTGAAT‑TAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGGGtt > 2:55915/1‑251 (MQ=25) cGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTgag < 1:55915/251‑1 (MQ=255) tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTg > 2:195718/1‑246 (MQ=255) tCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGAGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTg > 1:106388/1‑246 (MQ=255) cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATcagatcggaagagcacacgttct > 1:25362/1‑229 (MQ=255) cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATc < 2:25362/229‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAACAGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGCATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTAAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGAc > 1:261483/1‑251 (MQ=255) atCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCa < 1:134196/250‑1 (MQ=255) aTCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATTCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGtt > 2:163612/1‑251 (MQ=255) aaCTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGc > 2:83309/1‑251 (MQ=255) cAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATc < 1:15194/251‑1 (MQ=38) tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATcaa > 1:236403/1‑248 (MQ=37) gAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTCTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAc < 2:205828/251‑1 (MQ=14) | GATAACCGTCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT‑GACTCAGTCATTTCATTTCTTCAT‑GTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT‑CAGCCTATTT‑AGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAC > NC_000913/2288681‑2289161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |