| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,415 | Δ57,799 bp | [intA]–emrB | 53 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjW, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, ypjB, ypjC, ileY, glaH, lhgD, gabD, gabT, gabP, glaR, kbp, yqaE, ygaV, ygaP, stpA, alaE, ygaC, ygaM, nrdH, nrdI, nrdE, nrdF, proV, proW, proX, ygaZ, ygaH, mprA, emrA, emrB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756415 | 2814213 | 57799 | 81 [0] | [1] 82 | [intA]–emrB | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjW,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,ypjB,ypjC,ileY,glaH,lhgD,gabD,gabT,gabP,glaR,kbp,yqaE,ygaV,ygaP,stpA,alaE,ygaC,ygaM,nrdH,nrdI,nrdE,nrdF,proV,proW,proX,ygaZ,ygaH,mprA,emrA,emrB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756414 | 0 (0.000) | 81 (1.460) | 77/488 | 0.0 | 100% | coding (256/1242 nt) | intA | integrase IntA |
| ? | NC_000913 | 2814214 = | 0 (0.000) | intergenic (+60/+4) | emrB/luxS | multidrug efflux pump membrane subunit EmrB/S‑ribosylhomocysteine lyase | |||||
GCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTGATTATTTCCGCCAATGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATC > NC_000913/2813971‑2814461 | ccaagccgttaactgatacggcaatccaagccgccaaacctcaagatgccgattaccagctttatgacggtgaagggcttactctgttaatcaagtccagtggcagaaagctttggcaattccgttactatcggcctttgaccaagcagcgcaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACt > 2:289605‑M2/244‑249 (MQ=255) caagccgttaactgatacggaaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttatgggcgaaagacaCTGACTAGa < 2:365257‑M2/9‑1 (MQ=255) aagccgttaactgatacggaaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACt > 1:93027‑M2/242‑247 (MQ=255) taactgatacggaaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaagctaaagttttattggcgaaagacaCTGACTAGATGTGCAg < 1:197137‑M2/16‑1 (MQ=255) actgatacggaaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactacgagccgaatctaaagttttattggcgaacgacaCTGACTAGCTGTGCAGTTc > 2:416859‑M2/233‑251 (MQ=255) gatacggaaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTg < 1:373821‑M2/22‑1 (MQ=255) aaatcaaagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTTACTAGATGTGCAGTTCCTTCAActtt > 2:102593‑M2/223‑250 (MQ=255) caaagccgccaaacctaaagatgccgattaccagctttatgacggggacgggcttactctgttaatcaagtccagtggcagtaagctttggcagttccgttactatcggcctttgaccaagcagcaaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttgtattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTctct < 1:225765‑M2/32‑1 (MQ=255) aagccgccaaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTc > 2:339261‑M2/217‑251 (MQ=255) agccgccaaacctacagacgccgattaccagctttatgacggtgaccggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgattcacgtaaactcagagccggatctaaagttttattggctaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCg > 2:109139‑M2/216‑251 (MQ=255) caaacctaaagctgccgattaccagctttatgacggtgacgggcttaatctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcccttgacccagcagcgaacccaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaaatccgagccgactctaaagttttattggcgaaagccaCTGACTAGATGTGCCGTTTCTGCAACTTCTCTTTCGGCCGTg > 2:78677‑M2/210‑251 (MQ=255) caaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTg < 1:92000‑M2/42‑1 (MQ=255) aaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctctcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagccaCTGACTAGCTGTGCAGTTCCTGCACCTTTGCTTTAGgcagcgc > 2:18936‑M2/209‑248 (MQ=255) aaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaacgttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCATTGc > 1:263370‑M2/209‑251 (MQ=255) aaacctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTATTTCGGCAGtgg > 2:334777‑M2/209‑250 (MQ=255) acctaaagatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCa < 2:21460‑M2/45‑1 (MQ=255) agatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGGGCAGTTCCTGCACCTTCTCTTTCGGCAGTGCCAGttctt > 2:359342‑M2/201‑251 (MQ=255) gatgccgattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGccagttattt > 2:263974‑M2/200‑247 (MQ=255) gattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCt < 1:297103‑M2/58‑1 (MQ=255) gattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCt < 1:263974‑M2/58‑1 (MQ=255) gattaccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaacaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGACAGTTCTTCGTTGCt > 2:92972‑M2/194‑251 (MQ=255) taccagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtcagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGtt > 1:52234‑M2/191‑251 (MQ=255) cagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAAc < 2:145191‑M2/26‑1 (MQ=255) cagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAAc > 1:145191‑M2/188‑213 (MQ=255) cagctttatgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGAt < 2:140456‑M2/64‑1 (MQ=255) atgacggtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACg > 1:321860‑M2/181‑251 (MQ=255) gtgacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGt < 1:217036‑M2/77‑1 (MQ=255) gacgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGGTGCTGTTGATGCGTCCGTCACGTTc > 2:131662‑M2/173‑251 (MQ=255) acgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTcc < 2:161646‑M2/80‑1 (MQ=255) acgggcttactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcccttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTcc > 2:338422‑M2/172‑251 (MQ=255) ggcttactctgttaatcccgtacagtggcagtaagctttggcaattccgttaatctcggcctttgacccagcagcgaaacaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGATGTTGATGCGTACGTCCCGTTcc > 2:136030‑M2/169‑248 (MQ=255) tactctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAAt < 1:159225‑M2/85‑1 (MQ=255) tctgttaatcaagtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagaagcgaaccaaacagagcttcggtgcctatcatgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGCTGTGCAGTTCCTGCCACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTCCGTCACGTTCCAGCATGCTAc > 1:416232‑M2/162‑251 (MQ=255) taatcaagtacagtggcaatacgctttggcaattccgttactatcggcccttgaccaagcaccgaacccaacagcgcttcggtgcctaacctgccgtctcgctttctgatgcacgtaaactcagagccgcatctaacgttttattggcgcaagacaCTGACTAAATGTGCAGTTCCTGCACCTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACCTTCCAGAATGCTAcgcgcc > 2:192418‑M2/157‑250 (MQ=255) agtccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATcc > 1:130389‑M2/151‑251 (MQ=255) ccagtggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCCCGTTCCAGAATGCTACGCGCAATATCCTgc > 2:200546‑M2/148‑251 (MQ=255) ggcagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTc > 1:314370‑M2/143‑251 (MQ=255) ggcagtaagctttggcaactccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtttcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTATATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCGTCGTTGCTGGAGATGCGTACGTCACGTTCCAGAAGTCTACGCGCAAGATCCTGCGCTTc < 2:26736‑M2/109‑1 (MQ=255) cagtaagctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCt > 2:100710‑M2/141‑251 (MQ=255) gctttggcaattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACg < 1:166237‑M2/117‑1 (MQ=255) ttggcaattccgttactatcggcctttggccaagcagcgaaccaaacagagcttcggtgcctatccggccgtttcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCGCTTTCGGCAGTGCCATTTCTGCGTTGCTGTTGATGCGGACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTGCCGGCAACGAg < 2:418452‑M2/119‑1 (MQ=255) caattccgttactatcggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCGGCAACGAGTGCAt < 1:123477‑M2/124‑1 (MQ=255) gttactatcggccgttgaccaagcagcgaaccaaacagagcttcggtgcctagcctgccgtctcgctttctgacgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaGTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGGAGTTCCAGTGCTTCGTTGCTGTGGATGCGGACGTCACGTTCCAGAATGCGACGGGCAATATCCTGCGCTTCCTGCAACGAGTGCATCGGGTaa < 1:289605‑M2/131‑1 (MQ=255) cggcctgtgaccacgcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaacgcagagccgaatctaaagttttattggcgaaagacaCTGACCAGATGTGCAGTGCCTGCAACTTCACTCTCGGCAGGGCCAGTTCTTCGTTGCTGGTCATGCGTATGTCACGTTCCAGAATGCTACGCGCAATATCCGGCGCTTCCCGCAACCAGTGCATCTGGTAAGTGCca < 2:272995‑M2/137‑1 (MQ=255) ggcctttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCacac < 1:53290‑M2/140‑1 (MQ=255) ttgaccaagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGt < 1:102593‑M2/144‑1 (MQ=255) gcccaagcagcgaaccaatcagagcgtcggtggctagcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTTACTAGATGTGCAGTTCCTGCAACTTCGCTGTCGGCGGTGCCAGTTCGTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTTCGCGCAATATCCTGCGCGGCCGGCAACGGGTGCATCTTGGAAGTGCCACACTGGTAg < 2:219689‑M2/146‑1 (MQ=255) accaagcagcgaaccaaacagagcttcggtgcctatccggccgtctcgctttctgatgcacgtaaactcagagccgaagctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGGGCCAGTTCTTCGTTGCTTTGGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCGTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGAc < 1:221623‑M2/148‑1 (MQ=255) aagcagcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGtt > 1:323590‑M2/101‑251 (MQ=255) gcagcgaaccaaacagagcttcggtgcctatcctgccgtatcgatttctgatgaacgtaaactcagagccgaatctaacgttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTCGACGTTc > 1:75132‑M2/99‑250 (MQ=255) agcgaaccaaacagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGCAAGTGCCACACTGGTAGACGTTCAGt > 1:312277‑M2/97‑251 (MQ=255) aacagagattcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgcatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCACCTTCTCTTTCGGCAGAGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTCAGTGCCACACTGGTAGACGTTCAGTTCCGGGAtc > 2:374576‑M2/88‑251 (MQ=255) cagagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGAtctg > 1:15530‑M2/86‑251 (MQ=255) agagattcggtgcccttcctgccgtctcgcattctgatgcacgtaaactcagagccgtatctaaagttttattggcgaaagacaCTGTCTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTGCTTCGTTGCTGTTGATGCTGACGTCACGTTCCAGAATGCGACGCGCAATATTCTGCGCTGCCTGCAACGAGTGCATCTTGTAAGTGCCACACTTGTAAGCGTTCAGGTCCGTGAtctga < 2:38989‑M2/167‑1 (MQ=255) gagcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGAtctgat < 1:310022‑M2/168‑1 (MQ=255) agcttcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGAtctgatt > 2:369081‑M2/83‑251 (MQ=255) tcggtgcctatcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGAtctgattct < 1:359342‑M2/171‑1 (MQ=255) atcctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACt < 1:18936‑M2/182‑1 (MQ=255) cctgccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTTCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTGGATGTTCAGTGCCGGGATCTGATTCTGATCCTGCACttt < 1:164745‑M2/184‑1 (MQ=255) cctgccgtcgcgcggtctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGTAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGAGCTGATTCTGATCCTGCAc < 2:93027‑M2/181‑1 (MQ=255) gccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACg > 2:285162‑M2/65‑213 (MQ=255) gccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACg < 1:285162‑M2/149‑1 (MQ=255) gccgtctcgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTc < 1:83004‑M2/185‑1 (MQ=255) cgctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGGAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTc < 1:49123‑M2/193‑1 (MQ=255) gctttctgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCtt < 2:321860‑M2/195‑1 (MQ=255) tgatgcacgtaaactcagagccgaatctaaagttttattggcgaaagaaaCTGACTAGATGTGCAGTTCCTGCCACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTg > 1:26423‑M2/51‑251 (MQ=255) gatgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGc < 1:205697‑M2/202‑1 (MQ=255) atgcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGcc < 1:339261‑M2/203‑1 (MQ=255) ggcacgtaaactcagagccgaatcgtaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGGTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTGCCTGCAACGAGTGCATCTGTTAAGTGCCAGACGGGTAGACGTTCATGTCCTTGATCTGAGTCGAATCCTGCACTTTCAGCATGTCTTCCATTGCCg < 2:189041‑M2/204‑1 (MQ=255) gcacgtaaactcagagccgaatctaaagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGc > 1:100463‑M2/47‑251 (MQ=255) cacgtaaactcagagccgaatctaaagttttattggcgacagacaCTAACTAGATGTGCAGTTCCTGCAACTTGTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCt > 1:431075‑M2/46‑251 (MQ=255) aatctaaagtcttattggcgaaagacaCTGACTTGATGTGCAGTTCCTGAAACTTCTCTTTCGGAAGTGCCAGTTCTTCGTTGCTGGTGATGCGTACGTCACGTTCCAGAATGCTACGCGGAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTCGACGTTCAGTTCCGGGATCTGATTCTGATCCTTCACTTTCAGCACGTCTTCCATTGCCGCGTTCCAGGCATCAGCAaca < 2:52234‑M2/224‑1 (MQ=255) cagttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGAAGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTACAGGCATCAGCAACACgctgc > 2:374535‑M2/22‑251 (MQ=255) gttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCa < 2:301312‑M2/221‑1 (MQ=255) gttttattggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCa > 1:301312‑M2/20‑240 (MQ=255) attggcgaaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTg > 2:112248‑M2/15‑251 (MQ=255) aaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCATTATCCTGCGCTTCATGCAACGAGTGCATCTGGTCAGTGCAACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCCCGTCTTCCATTGCCGCTTTCAAGGCATCAGCAACACGCTGCTCATCTGgcgtccc > 2:137923‑M2/8‑248 (MQ=255) aaagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTACGGCAGTGCCAGTTCTTCGTTGCGGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATGGCCGCTTTCCAGGCATCAGCAACACGCTGGTCATCTGGCGTAcc < 2:191389‑M2/244‑1 (MQ=255) aagacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTAcc > 1:368955‑M2/7‑250 (MQ=255) agacaCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGATGTTGATGAGTACGTAACGTTACAGAATGCTACGCGCAATATCCTGCGATTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCa > 1:383901‑M2/6‑250 (MQ=255) caCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTAGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGTTCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCACCACGCTGCTCCTCTGGCGTACCAATc > 2:321547‑M2/3‑250 (MQ=255) aCTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATc > 2:132812/1‑249 (MQ=255) | GCTTGGGATGACGCAACAGCAGGCATCAGGCTGGATTGCCCAGCAGATCACCAATCAGGGGCTGATTATTTCCGCCAATGAGATCTTCTGGATGTCAGCCGGGATATTCCTCGTCCTGCTGGGGCTGGTGTGGTTTGCTAAACCGCCATTTGGCGCAGGTGGCGGCGGAGGCGGTGCGCACTAAGTACAACTAAGCCAGTTCATTTGAACTGGCTTTTTTCAATTAATTGTGAAGATAGTTTACTGACTAGATGTGCAGTTCCTGCAACTTCTCTTTCGGCAGTGCCAGTTCTTCGTTGCTGTTGATGCGTACGTCACGTTCCAGAATGCTACGCGCAATATCCTGCGCTTCCTGCAACGAGTGCATCTGGTAAGTGCCACACTGGTAGACGTTCAGTTCCGGGATCTGATTCTGATCCTGCACTTTCAGCACGTCTTCCATTGCCGCTTTCCAGGCATCAGCAACACGCTGCTCATCTGGCGTACCAATC > NC_000913/2813971‑2814461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |