New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2563393	36 (0.510)	3 (0.040)	3/488	3.9	5.8%	intergenic (+276/‑199)	yffP/yffQ	uncharacterized protein YffP/uncharacterized protein YffQ
	?	NC_000913	= 3201007	62 (0.880)					intergenic (‑42/‑200)	ygiF/ygiM	inorganic triphosphatase/putative signal transduction protein (SH3 domain)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCAGCGGCAAGACTGGCGGTCATTTCCCCGCTCCTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTGGTGTTTGCT  >  NC_000913/2563147‑2563640                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                        gTCAGCGGCAAGACTGGCGGTCATTTCCCCGCTCCTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTGTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATGGATTAAGTGCTGAACATTCAAATCAACTCccacca                                                                                                                                                                                                                                                     <  2:220253/251‑1 (MQ=255)           aGACTGGCGGTCATTTCCCCGCTCCGACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCcaacaa                                                                                                                                                                                                                                           <  2:353031/251‑1 (MQ=255)                            cccGCTCCTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAAtttt                                                                                                                                                                                                                          <  1:289107/251‑1 (MQ=255)                             ccGCTCCTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTGTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTtg                                                                                                                                                                                                                         <  2:180943/251‑1 (MQ=255)                                cTCCTACGCGAAAAATCCATCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTtgtg                                                                                                                                                                                                                       >  1:173874/1‑250 (MQ=255)                                  ccTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATg                                                                                                                                                                                                                    >  1:52684/1‑251 (MQ=255)                                     aCGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTTATGGCCGCCGACGTTGCACAATTGATTAATTGCTGAACATTCAAATCAACTCCGACCAAGGCCAACAAGATGGGATGTGAATGTTGTGATGCAg                                                                                                                                                                                                                 <  2:389525/251‑1 (MQ=255)                                       gcgAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGtgctgc                                                                                                                                                                                                                   >  2:469326/1‑247 (MQ=255)                                             aaTCCCTCACAACTACCCTGCAAATTGTCCAGATTTCACGTACACGCTCCAAAAATAAAGGCCCAGGCAGCTAGCAACCGACCCGGGCCTTGCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGTTGGGAGACTGATGGCCGCCGGCGTGGCACAATTGATTAATTTCTGAACATTCAAAGCAACTCCCACCAAAGCCAATAAGATGGGAGGTGAATTTTGTGATGCAGATCGCttt                                                                                                                                                                                                         <  2:497035/251‑1 (MQ=255)                                              aTCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCtttt                                                                                                                                                                                                        >  2:492082/1‑251 (MQ=255)                                                cccTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTc                                                                                                                                                                                                      <  1:92660/251‑1 (MQ=255)                                                       aaCTACCCGGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATGATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATGGATTAATTGCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGAGGGGAGGTGAATTTTGTGATTCAGATCGCTTTTTCCCTTCAg                                                                                                                                                                                               <  2:293742/251‑1 (MQ=255)                                                        aCTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAACGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAgg                                                                                                                                                                                              >  1:214553/1‑251 (MQ=255)                                                                      tttCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTGTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTaa                                                                                                                                                                                 <  2:233220/250‑1 (MQ=255)                                                                         ccAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATtc                                                                                                                                                                              >  2:83770/1‑250 (MQ=255)                                                                                     tACACGCGCCAACCATACACACCCAGGCAGTTAGCAACCTACCCGGGCATTTCTCCCAATCCCCGCTGACATTATCTCAACCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTACTTTCTGAACATTCAAATCAACTCCCACCACAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGaacgg                                                                                                                                                                 >  2:314197/1‑248 (MQ=255)                                                                                                     aaaGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCcaacaacaa                                                                                                                                                 <  2:273390/251‑1 (MQ=255)                                                                                                              ggCAGTTAGCAACCTACTCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTAAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATaa                                                                                                                                            >  2:485740/1‑247 (MQ=255)                                                                                                                 aGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATggg                                                                                                                                     >  1:413224/1‑251 (MQ=255)                                                                                                                     aGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGt                                                                                                                                 <  2:141441/251‑1 (MQ=255)                                                                                                                                 gggCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACg                                                                                                                     <  1:83770/251‑1 (MQ=255)                                                                                                                                  ggCCTTTCTCACAATCCCCGCGTACAATATAGCACCCATCTTGCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAAGTTCGGAACATACAAATCAACTCCCTACAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGAGCGCTTTGTCCCTTCAGGCATTTTTGTGTAATTCAATCAACGAAATGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAAc                                                                                                                      <  2:506847/249‑1 (MQ=255)                                                                                                                                           cacaATCCCCGCTGACATTATATCACCCATCTTTCCGTTGTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTg                                                                                                           <  2:127435/251‑1 (MQ=255)                                                                                                                                                cccccGCTGACATTCTATCACCCAGCTATCCGTTTTCAGGAGGTATACTGAGGTCCGCCGACGGTGCACAATTGATTAAATTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTGTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTTGTTAAGTCAAGCAACGAAAGGCAGTACCCGACAACAAAATAAAGATGAGAGGTAAAAATGAAACGGTGGGAAGGGGCttt                                                                                                      <  2:259993/250‑1 (MQ=255)                                                                                                                                                      cTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGCGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc                                                                                                                                                                       >  1:213397/1‑180 (MQ=255)                                                                                                                                                      cTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAAc                                                                                                                                                                       <  2:213397/180‑1 (MQ=255)                                                                                                                                                                                                 gaaggCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGAc                                                      <  2:464197/247‑1 (MQ=255)                                                                                                                                                                                                           gACGTTGCTCAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGCGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACt                                           >  1:126385/1‑251 (MQ=255)                                                                                                                                                                                                                         gATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAatc                              >  1:400397/1‑250 (MQ=255)                                                                                                                                                                                                                            tAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGTGAGGTTAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGACAGTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACaaaa                                                                                                                                               <  1:595806/134‑1 (MQ=255)                                                                                                                                                                                                                            tAATTTCTGAAAATTCACATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGCTCGATTTTTCCCTTCAGGCATTTTTGTTTAATTCACTCAACGAAAGGCAGTTCCCAACAACaaaa                                                                                                                                               >  2:595806/1‑134 (MQ=255)                                                                                                                                                                                                                                  cTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAAGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTACTTCAATCAACGAAAGGCAGTTCCCACCAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATgg                    >  1:44042/1‑251 (MQ=255)                                                                                                                                                                                                                                            aaaTCAACTCCCACCAAAGCCAACAAGCTGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTgg          >  1:245800/1‑251 (MQ=255)                                                                                                                                                                                                                                              aTCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTGgtg        >  2:256270/1‑251 (MQ=255)                                                                                                                                                                                                                                                cAACTCCCACCAAAGCCAACAAGATGGGAGGTGACTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTGGTGtt      >  2:450853/1‑251 (MQ=255)                                                                                                                                                                                                                                                    tCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTGGTGtttgct  >  1:468850/1‑251 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                        GTCAGCGGCAAGACTGGCGGTCATTTCCCCGCTCCTACGCGAAAAATCCCTCACAACTACCCTGCAAATTTTCCAGATTTCACGTACACGCGCCAAAAATAAAGGCCCAGGCAGTTAGCAACCTACCCGGGCCTTTCTCACAATCCCCGCTGACATTATATCACCCATCTTTCCGTTTTCAGGTGGGAGACTGATGGCCGCCGACGTTGCACAATTGATTAATTTCTGAACATTCAAATCAACTCCCACCAAAGCCAACAAGATGGGAGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCGCAATCATCCTGATGGTGCTGACTGGTGTTTGCT  >  NC_000913/2563147‑2563640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.