| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3216779 | 3270031 | 53253 | 30 [0] | [0] 31 | [nfeR]–yhaC | [nfeR],aer,patA,ygjH,ebgR,ebgA,ebgC,ygjI,ygjJ,ygjK,fadH,higA,higB,rlmG,ygjP,ygjQ,ygjR,alx,sstT,ygjV,uxaA,uxaC,exuT,exuR,yqiM,yqjA,mzrA,yqjC,yqjD,yqjE,yqjK,yqjF,yqjG,yhaH,yhaI,yhaJ,yhaK,yhaL,cyuA,cyuP,tdcG,tdcF,tdcE,tdcD,tdcC,tdcB,tdcA,tdcR,yhaB,yhaC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216778 | 0 (0.000) | 30 (0.480) +GTC |
30/480 | 0.6 | 100% | intergenic (‑287/‑1) | nfeF/nfeR | NADPH‑dependent ferric‑chelate reductase/DNA‑binding transcriptional repressor NfeR |
| ? | NC_000913 | 3270032 = | 0 (0.000) | intergenic (+430/+184) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
AACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAAT > NC_000913/3216533‑3217019 | aaCTCGCAAATGATAATGATTGTAAATCATAAAAAATGCAAGCGATTTGTAGAACTGATAGTTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctc < 1:151731‑M1/251‑6 (MQ=255) aaaTGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggac > 1:299737‑M1/1‑239 (MQ=255) aatgataatgatTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacag < 1:443107‑M1/251‑14 (MQ=255) taatgatTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACAGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCATGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTTATgtctcgtggacagtcatt > 1:52930‑M1/1‑233 (MQ=255) cATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTAACAGGCCTACGTGTGAGATAAGTCCACGTTTAAAAATCATTTTTACCCTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAACGAGGCTGATgtctcgtggacagtcattcatctttctgcccc > 1:50115‑M1/1‑219 (MQ=255) gATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATCACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctcc < 1:138524‑M1/251‑36 (MQ=255) tAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGTTGAGTCCACGTTTAAAAATCATTTTTACACTTGCGAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcttggacagtcattcatctttctgcccctcca > 2:151076‑M1/1‑214 (MQ=255) tttGTAGAACTGATATGTCTATAGTCTGATAAGACGAAACGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGACTTATCCGGCCTACGTGTGCGATGAGTCCAAGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTCATTAAGCAACAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccg > 1:225736‑M1/1‑201 (MQ=255) tGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAAGCCTCATTACAAAACCCCGGATGCGGAGTGCACGACTTATACGGCCTAAGCGTGAGCTAACTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATCTAAATTAGATATCTCTAATTAAGCAAAAGGAGGCTGATgtctcgtggccagtcattcatctttctgcccctccaaaagcaaaaacccgcc > 1:527254‑M1/1‑199 (MQ=255) atggcctaataagccgaCCCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTTGAGATGAGTCCACGTTTAAAAACCATTTTAACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAGGGAGGCTGATgtctcgtggacagtcactcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacg < 1:87113‑M1/241‑69 (MQ=255) aGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaa > 2:316537‑M1/1‑179 (MQ=255) aGTCGGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaa < 1:316537‑M1/217‑39 (MQ=255) tataaagccgaaccgccTCTTCTCAGGCATCATTACGCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttcggcccctccaaaagcaaaaacccgccgaagcgggttttgacgtaaac < 1:438164‑M1/240‑74 (MQ=255) tAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtg > 2:317871‑M1/1‑172 (MQ=255) ggtaccgCCTCTCTTCAGGCATCATTACTCAACGCCGGATTCTGCGTAAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGTAAGAACGCTCATATCAGATATAATTTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacggtcaatcatctttctgcccctccaaaaaaaaaatccctccgaagcggttgtttacgtaaaccaggtgaaact < 2:360182‑M1/248‑85 (MQ=255) aCCGCCTCTTCTCAGGCATCCTTACTCACCGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgac > 1:185458‑M1/1‑164 (MQ=255) tctcAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataag < 1:317871‑M1/249‑95 (MQ=255) gctcaGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTTAGATGATTCCACGTTTAAAAATCAGTTGTACACTTGCAAGAACGCTCATATCAGATATAAATTAAATATATCTAATTAAGCAAAAGTAGGCTGATgtctcttgggcagtcattcatctttctgccccgccaaaagcaaaaacccgcctaagcgggtttttacgtaaaccaggtgaaactgaccgataagcc < 1:222967‑M1/250‑97 (MQ=255) gcggcgTGAACGCCTTACCCGGCCTACGTGGGAGATGAGTCCACGTTTAAAAATCATTTTAACCCTTGCAAGAACGCTCATATCGGATATAAATTAGATATATCAAATTAAGCAAAAGGAGGCTAATgtctcggggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggttgttacgtaaaccaggtgaaactgaccgataagccgctttctgttgggtagagcgtcgtggac < 2:264769‑M1/251‑125 (MQ=255) cgTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACAATCGCAAGAACGATCATATCAGATATAAATTAGATATATCTAATTAAGCAAACGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtc > 1:524502‑M1/1‑123 (MQ=255) aCGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccg > 1:138084‑M1/1‑85 (MQ=255) acacTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttc > 1:382188‑M1/1‑66 (MQ=255) aaCGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaac > 2:387471‑M1/1‑55 (MQ=255) taAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgcaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggcgaaactgaccgaaaagccgggt > 2:437636‑M1/1‑38 (MQ=255) tAGATATATCTAATTAAGCAAACGGAGGCTGATgtatcgtggacagtcattcatctttatgcccctcccaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgacagataagccgctttattttggggatagcgtcgtggacagtcattcatctttctgctcctccaaaaggaaaaacccgccgaagcgggtgtttacgtaaatcagccgcaactgaccgataagccgggtttcgt > 2:366880‑M1/1‑33 (MQ=255) gATATATCTAATTAAGCAAAAGGAGGCTGATgtctcgtggacagtcaatcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagccaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttatgtcg > 1:226671‑M1/1‑31 (MQ=255) atataatTAAGAAAAGGGAGGCTGATgtcccgtgaacagtcattcatttttctgcccctcaaaaagcaaaaccccgccgaagcgggtttttacgtaacccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagcctggttctgtcgtggac < 1:151584‑M1/248‑226 (MQ=255) aaGCAAAAGGAGGCTGATgtatcgtggacagtcattcatatttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggaccgtcattcatctttctgcccctccaaaagcaaaaacccgc > 1:488629‑M1/1‑18 (MQ=255) aaaaGGAGGCTGAGgtctcgtggacagtcattcatctttcggcccctcaaaaagaaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgctttcttttgggtatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaatcaggtgaaactgaccgataagccgggttctgtcgtggacagtcattcatct < 1:206885‑M1/251‑238 (MQ=255) ggaggCTGATgtctcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcgggtttttacgtaaaccaggtgaaactgaccgataagccgcgttcttttggggatagcgtcgtggacagtcattcatctttctgcccctccaaaagcaaaaacccgccgaagcggggttttacgtaaatcaggtgaaacttccccatacgccgggttctgtcgtggccggcccttcctctaggc > 2:428585‑M1/1‑10 (MQ=255) | AACTCGCAAATGATAATGATTGTTAATCATGATAAATGCAAGCGATTTGTAGAACTGATATGTCTATAGTCTGATAAGACGAACCGCCTCTTCTCAGGCATCATTACTCAACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTGTGAGATGAGTCCACGTTTAAAAATCATTTTTACACTTGCAAGAACGCTCATATCAGATATAAATTAGATATATCTAATTAAGCAAAAGGAGGCTGATATGAGCCATCATCACGAAGGGTGTTGTAAACATGAAGGCCAGCCACGCCATGAGGGCTGCTGCAAAGGTGAGAAGTCAGAACACGAGCACTGCGGACACGGTCACCAGCATGAACACGGTCAATGCTGCGGTGGTCGCCACGGTCGCGGCGGCGGTCGTCGGCAACGTTTCTTTGGTCACGGTGAATTACGTCTGGTGATTCTGGATATTCTCTCGCGCGATGACAGCCACGGTTACGAAT > NC_000913/3216533‑3217019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |