| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3216779 | 3270031 | 53253 | 30 [0] | [0] 31 | [nfeR]–yhaC | [nfeR],aer,patA,ygjH,ebgR,ebgA,ebgC,ygjI,ygjJ,ygjK,fadH,higA,higB,rlmG,ygjP,ygjQ,ygjR,alx,sstT,ygjV,uxaA,uxaC,exuT,exuR,yqiM,yqjA,mzrA,yqjC,yqjD,yqjE,yqjK,yqjF,yqjG,yhaH,yhaI,yhaJ,yhaK,yhaL,cyuA,cyuP,tdcG,tdcF,tdcE,tdcD,tdcC,tdcB,tdcA,tdcR,yhaB,yhaC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3216778 | 0 (0.000) | 30 (0.480) +GTC |
30/480 | 0.6 | 100% | intergenic (‑287/‑1) | nfeF/nfeR | NADPH‑dependent ferric‑chelate reductase/DNA‑binding transcriptional repressor NfeR |
| ? | NC_000913 | 3270032 = | 0 (0.000) | intergenic (+430/+184) | yhaC/rnpB | uncharacterized protein YhaC/RNase P catalytic RNA component | |||||
TTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAT > NC_000913/3269783‑3270276 | aactcgcaaatgataatgattgtaaatcataaaaaatgcaagcgatttgtagaactgatagttctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtctc < 1:151731‑M2/2‑1 (MQ=255) aaatgataatgattgttaatcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGAc > 1:299737‑M2/243‑250 (MQ=255) aatgataatgattgttaatcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAg < 1:443107‑M2/10‑1 (MQ=255) taatgattgttaatcatgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaacagcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccatgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggcttatgtcTCGTGGACAGtcatt > 1:52930‑M2/237‑251 (MQ=255) catgataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttaacaggcctacgtgtgagataagtccacgtttaaaaatcatttttacccttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaacgaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGcccc > 1:50115‑M2/223‑251 (MQ=255) gataaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcatcactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTcc < 1:138524‑M2/32‑1 (MQ=255) taaatgcaagcgatttgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagttgagtccacgtttaaaaatcatttttacacttgcgagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCTTGGACAGTCATTCATCTTTCTGCCCCTCCa > 2:151076‑M2/218‑250 (MQ=255) tttgtagaactgatatgtctatagtctgataagacgaaacgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgacttatccggcctacgtgtgcgatgagtccaagtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctcattaagcaacaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccg > 1:225736‑M2/205‑251 (MQ=255) tgtagaactgatatgtctatagtctgataagacgaaccgcctcttctcaagcctcattacaaaaccccggatgcggagtgcacgacttatacggcctaagcgtgagctaactccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatctaaattagatatctctaattaagcaaaaggaggctgatgtcTCGTGGCCAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgcc > 1:527254‑M2/203‑251 (MQ=255) atggcctaataagccgacccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtttgagatgagtccacgtttaaaaaccattttaacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaagggaggctgatgtcTCGTGGACAGTCACTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACg < 1:87113‑M2/65‑1 (MQ=255) agtctgataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaa > 2:316537‑M2/183‑217 (MQ=255) agtcggataagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCaaa < 1:316537‑M2/35‑1 (MQ=255) tataaagccgaaccgcctcttctcaggcatcattacgcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCGGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTGACGTAAAc < 1:438164‑M2/70‑1 (MQ=255) taagacgaaccgcctcttctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTg > 2:317871‑M2/176‑251 (MQ=255) ggtaccgcctctcttcaggcatcattactcaacgccggattctgcgtaaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgtaagaacgctcatatcagatataatttagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACGGTCAATCATCTTTCTGCCCCTCCAAAAAAAAAATCCCTCCGAAGCGGTTGTTTACGTAAACCAGGTGAAACt < 2:360182‑M2/81‑1 (MQ=255) accgcctcttctcaggcatccttactcaccgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGAc > 1:185458‑M2/168‑251 (MQ=255) tctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAg < 1:317871‑M2/91‑1 (MQ=255) gctcaggcatcattactcaacgccggatgcggcgtgaacgccttatccggcctacgtgttagatgattccacgtttaaaaatcagttgtacacttgcaagaacgctcatatcagatataaattaaatatatctaattaagcaaaagtaggctgatgtcTCTTGGGCAGTCATTCATCTTTCTGCCCCGCCAAAAGCAAAAACCCGCCTAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGcc < 1:222967‑M2/93‑1 (MQ=255) gcggcgtgaacgccttacccggcctacgtgggagatgagtccacgtttaaaaatcattttaacccttgcaagaacgctcatatcggatataaattagatatatcaaattaagcaaaaggaggctaatgtcTCGGGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTGTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTGTTGGGTAGAGCGTCGTGGAc < 2:264769‑M2/121‑1 (MQ=255) cgtgaacgccttatccggcctacgtgtgagatgagtccacgtttaaaaatcatttttacaatcgcaagaacgatcatatcagatataaattagatatatctaattaagcaaacggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGtc > 1:524502‑M2/127‑251 (MQ=255) acgtttaaaaatcatttttacacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgccg > 1:138084‑M2/89‑251 (MQ=255) acacttgcaagaacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTc > 1:382188‑M2/70‑205 (MQ=255) aacgctcatatcagatataaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAAc > 2:387471‑M2/59‑128 (MQ=255) taaattagatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGCAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGCGAAACTGACCGAAAAGCCGGGt > 2:437636‑M2/42‑251 (MQ=255) tagatatatctaattaagcaaacggaggctgatgtaTCGTGGACAGTCATTCATCTTTATGCCCCTCCCAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACAGATAAGCCGCTTTATTTTGGGGATAGCGTCGTGGACAGTCATTCATCTTTCTGCTCCTCCAAAAGGAAAAACCCGCCGAAGCGGGTGTTTACGTAAATCAGCCGCAACTGACCGATAAGCcgggtttcgt > 2:366880‑M2/37‑247 (MQ=255) gatatatctaattaagcaaaaggaggctgatgtcTCGTGGACAGTCAATCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCCAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTATGTCg > 1:226671‑M2/35‑251 (MQ=255) atataattaagaaaagggaggctgatgtcCCGTGAACAGTCATTCATTTTTCTGCCCCTCAAAAAGCAAAACCCCGCCGAAGCGGGTTTTTACGTAACCCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCTGGTTCTGTCGTGGAc < 1:151584‑M2/222‑1 (MQ=255) aagcaaaaggaggctgatgtaTCGTGGACAGTCATTCATATTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACCGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc > 1:488629‑M2/22‑182 (MQ=255) aaaaggaggctgaggtcTCGTGGACAGTCATTCATCTTTCGGCCCCTCAAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt < 1:206885‑M2/234‑1 (MQ=255) ggaggctgatgtcTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCGTTCTTTTGGGGATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGGTTTTACGTAAATCAGGTGAAACTTCCCCAtacgccgggttctgtcgtggccggcccttcctctaggc > 2:428585‑M2/14‑233 (MQ=255) gatgtctCGTGGACAGTCATTCATCTTTCTGCCCCTAGAAAAGCAAACACCGGACGAAGCGGGGTTTTAAGGAAAAAAGGTGAAACTGACCGATACGCCACTTTCTTTTGGGTATAACGTGGTGGACGGTCATTCATCTTTCTGCCCCTCCAAAAGCAAACACCCGCCGCAGCGGGTTTTTACGGAAATCAGATGAACCTGACCGGTAAGCCGGGTTCTGTCGTGAGCAGTCATTCATCTAGGACAGCaac > 1:30997/7‑250 (MQ=9) | TTTGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAT > NC_000913/3269783‑3270276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |