| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 832,467 | Δ15,538 bp | ybiA–[glnH] | 16 genes ybiA, dinG, ybiB, hcxB, zbiJ, ybiE, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, [glnH] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 832467 | 848004 | 15538 | 33 [0] | [0] 33 | ybiA–[glnH] | ybiA,dinG,ybiB,hcxB,zbiJ,ybiE,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,[glnH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 832466 | 0 (0.000) | 33 (0.540) | 32/492 | 0.5 | 100% | intergenic (+230/+2) | rhlE/ybiA | ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA |
| ? | NC_000913 | 848005 = | 0 (0.000) | intergenic (‑1/+403) | glnH/dps | L‑glutamine ABC transporter periplasmic binding protein/DNA protection during starvation protein | |||||
GTTTGCAGTGCCGGAATGATCCCACTGAAATCCATCGGCTTCAGTTCGTAATCCAGCTTCAGCTCTTTAGCGATGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTA > NC_000913/847763‑848244 | gaggcgcagtaatcttttatgccgggatatgccaggcatcaggcggaggaacaaacgaaaaactgcctgatgcgctgcgcttatcaggtctacgggaactttgcaatatattgaatttgcatgcttttgtaggccggataaggcttttacgccgcatccggcattgcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgtttgaccgcccataagccaccgagacAGCATTTcc < 2:32717‑M2/9‑1 (MQ=255) cccggcatcaggctgatgaacaaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGcgg > 1:319159‑M2/212‑250 (MQ=255) aaggctgatgaacaaacgcaaaactgcctgatgcgctacgcttttcaggcttaagtgaactcttcaatatattgaatttgaatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTc < 2:265614‑M2/47‑1 (MQ=255) ctgatgaacaaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACat > 1:413734‑M2/200‑250 (MQ=255) gatgaacaaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACatat < 1:335767‑M2/53‑1 (MQ=255) gaacaaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATg < 2:16827‑M2/56‑1 (MQ=255) caaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGaaaa < 1:16796‑M2/60‑1 (MQ=255) aaacgcaaaactgcctgatgcgctacgcttatcaggcctacgtgaactctgcaatatattgaatttgcatgattttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGaaaa > 1:247770‑M2/191‑250 (MQ=255) tatcaggcctacgttaactcggcaatatattgaatgtgcatgcttttgtaggccggataaggcggttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagcctccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGAt < 2:367815‑M2/88‑1 (MQ=255) tgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTg < 2:319313‑M2/37‑1 (MQ=255) tgaactctgcaatatattgaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTg > 1:319313‑M2/149‑185 (MQ=255) gaactctgcattatattgaatttgcatgcttttgtaggccggctaagacgtttccgccgcatccggcatttcacaccacgcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgccaatacgccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCATGCGGGACATTCTCATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTCGCTTTTTCGTGATGCGGc > 1:87511‑M2/148‑250 (MQ=255) gcaaattatttaatttgcatgcttttgtaggccggataaggcgtttacgccgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatcttttttaccgcccagaagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACg < 2:403760‑M2/110‑1 (MQ=255) atattgaatttgcatgcttttggaggccgganaaggcgtttacggcgcctccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAGCTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGc < 2:238310‑M2/116‑1 (MQ=255) tacgccgtatccggcattacacaacaagcacttttcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCAGTGCCGTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATAGATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTg < 2:153802‑M2/155‑1 (MQ=255) cgcatccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCAc < 1:207050‑M2/161‑1 (MQ=255) ccggcatttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagccAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGTTATATAGGGAAATANCCAGAAAATGAACTTTTCTGGGCAACCAATc > 2:222314‑M2/86‑251 (MQ=255) gcagttcataacacgcacttgtcagcaatttgagatcacgggaaaaaatttatctgttttaccgccaataagcccaagagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATAGGAAAAAATCGTGCCAGGTTTGCAACTCCTTGATTTGTAGAGATGCGGCAAAAACGTGATGCACGATGTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCTCCAATCTgg < 2:356698‑M2/169‑1 (MQ=255) ttcacaacaagcacttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTgc < 1:58539‑M2/172‑1 (MQ=255) tcacaacaagcacttgtcagcaattggagaacacgtgaaaaaatttatctgttttaccgcccataagccacctagacAGCATTTCCTTTTTTCAATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAATCGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTgcg < 2:85485‑M2/173‑1 (MQ=255) caacaagcatctgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCTCCAATCTGGTGCGCTaa < 2:330317‑M2/177‑1 (MQ=255) ttgtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCAc > 1:465896‑M2/65‑251 (MQ=255) gtcagcaatttgagaacacgggaaaaaatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACAGTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACt < 2:124109‑M2/188‑1 (MQ=255) caatttgataacacggtaaaaaattttgctgtattaccgcccataagccaccgtgacAGCATTTCCTCTTTGACATCCACGGGACTATCCCCTGCGTGACATTAACATATCTGAAAAAATCGTGCCAGTTTTGCAACTCCTTGGTTTTTCGAGATGCGGCAAAAACGTGATGCACGAATTATAGGGCAATTCCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTACAATTGGGCACTCAacac < 2:191667‑M2/194‑1 (MQ=255) caattatagaatacgggaaaaaagttatctgttttaccgcccagacgccaccgagacAACATTTCCTTTTTTCTATCCACGGGACGAGCCCCTGCGTGACATTCCCATATAGGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACTTGATGCACGATTTATAGGGCAATACCCTGAAGATGCTCCATTCTGGGGCGCCAATCTGGTGCTTTAAAATTGTGCACTCAacac < 2:16386‑M2/194‑1 (MQ=255) tttgagaacacgggaaataatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGCTCCCCTGCGTGACATTCACATATATGCAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGCGATGCGGCAAAAACGAGCTGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGCGAACCAATCTGACGCACTAAAATTGTGCACTAAACACAGt > 2:349138‑M2/55‑251 (MQ=255) gaacacgggaaaaaatttatctgttttaccgcccataagccaccgcgacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTNCGCTAAAATTGTGCACTCAACACAGTgattt > 2:234004‑M2/50‑250 (MQ=255) aatttatctgttttaccgcccataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGTCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAAc < 1:254775‑M2/215‑1 (MQ=255) tttttaccgcccataagccaccgagacAGCNTTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGATATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTTGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGaa < 2:247087‑M2/223‑1 (MQ=255) gcccataagccaccgcgacAGCTCTTCCTTATTTCTATCCACGGGAAGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGGTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATc < 2:9100‑M2/232‑1 (MQ=255) ataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAAc > 2:271226‑M2/16‑124 (MQ=255) ataagccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAAc < 1:271226‑M2/109‑1 (MQ=255) gccaccgagacAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTa < 2:329218‑M2/240‑1 (MQ=255) | GTTTGCAGTGCCGGAATGATCCCACTGAAATCCATCGGCTTCAGTTCGTAATCCAGCTTCAGCTCTTTAGCGATGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTA > NC_000913/847763‑848244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |