| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 832,467 | Δ15,538 bp | ybiA–[glnH] | 16 genes ybiA, dinG, ybiB, hcxB, zbiJ, ybiE, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, [glnH] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 832467 | 848004 | 15538 | 33 [0] | [0] 33 | ybiA–[glnH] | ybiA,dinG,ybiB,hcxB,zbiJ,ybiE,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,[glnH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 832466 | 0 (0.000) | 33 (0.540) | 32/492 | 0.5 | 100% | intergenic (+230/+2) | rhlE/ybiA | ATP‑dependent RNA helicase RhlE/N‑glycosidase YbiA |
| ? | NC_000913 | 848005 = | 0 (0.000) | intergenic (‑1/+403) | glnH/dps | L‑glutamine ABC transporter periplasmic binding protein/DNA protection during starvation protein | |||||
GCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGCGCACGCAGTTCTGCATGCTGTTCGAATTTAGCGCGAAGTGCTTTTCGCATCACCTGTTCTTTGACCGACTCCCAGTTTTTACGCAGAGGCTTAG > NC_000913/832225‑832706 | gaggcgcagtAATCTTTTATGCCGGGATATGCCAGGCATCAGGCGGAGGAACAAACGAAAAACTGCCTGATGCGCTGCGCTTATCAGGTCTACGGGAACTTTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCTTTTACGCCGCATCCGGCATTGCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTGACCGCCCATAAGCCACCGAGACagcatttcc < 2:32717‑M1/248‑10 (MQ=255) cccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgg > 1:319159‑M1/1‑211 (MQ=255) aagGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTTTCAGGCTTAAGTGAACTCTTCAATATATTGAATTTGAATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattc < 2:265614‑M1/249‑48 (MQ=255) cTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacat > 1:413734‑M1/1‑199 (MQ=255) gatgaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatat < 1:335767‑M1/250‑54 (MQ=255) gaACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatg < 2:16827‑M1/250‑57 (MQ=255) cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaa < 1:16796‑M1/251‑61 (MQ=255) aaaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGATTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaa > 1:247770‑M1/1‑190 (MQ=255) tATCAGGCCTACGTTAACTCGGCAATATATTGAATGTGCATGCTTTTGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCTCCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgat < 2:367815‑M1/249‑89 (MQ=255) tGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctg < 2:319313‑M1/185‑38 (MQ=255) tGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctg > 1:319313‑M1/1‑148 (MQ=255) gAACTCTGCATTATATTGAATTTGCATGCTTTTGTAGGCCGGCTAAGACGTTTCCGCCGCATCCGGCATTTCACACCACGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCAATACGCCACCGAGACagcatttccttttttctatccacgggacgatcccatgcgggacattctcatatatgaaaaaatcgtgccagttttgcaactcctcgctttttcgtgatgcggc > 1:87511‑M1/1‑147 (MQ=255) gcaaattatttaattTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTTTTTTACCGCCCAGAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacg < 2:403760‑M1/244‑111 (MQ=255) atatTGAATTTGCATGCTTTTGGAGGCCGGANAAGGCGTTTACGGCGCCTCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcagctccttgatttttcgagatgcggcaaaaacgtgatgc < 2:238310‑M1/251‑117 (MQ=255) tACGCCGTATCCGGCATTACACAACAAGCACTTTTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcagtgccgtttttctatccacgggacgatcccctgcgtgacattcacatagatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctg < 2:153802‑M1/250‑156 (MQ=255) cgcATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcac < 1:207050‑M1/251‑162 (MQ=255) ccGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGCCagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgttatatagggaaatanccagaaaatgaacttttctgggcaaccaatc > 2:222314‑M1/1‑85 (MQ=255) gcagttcataACACGCACTTGTCAGCAATTTGAGATCACGGGAAAAAATTTATCTGTTTTACCGCCAATAAGCCCAAGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatataggaaaaaatcgtgccaggtttgcaactccttgatttgtagagatgcggcaaaaacgtgatgcacgatgtatagggcaataccctgaagatgcaccattctggggctccaatctgg < 2:356698‑M1/247‑170 (MQ=255) ttCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgc < 1:58539‑M1/250‑173 (MQ=255) tCACAACAAGCACTTGTCAGCAATTGGAGAACACGTGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCTAGACagcatttccttttttcaatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaatcgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgcg < 2:85485‑M1/250‑174 (MQ=255) caacaaGCATCTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggctccaatctggtgcgctaa < 2:330317‑M1/251‑178 (MQ=255) ttGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgcgctaaaattgtgcac > 1:465896‑M1/1‑64 (MQ=255) gTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacagtcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgcgctaaaattgtgcact < 2:124109‑M1/250‑189 (MQ=255) caattatagaatacgggAAAAAAGTTATCTGTTTTACCGCCCAGACGCCACCGAGACaacatttccttttttctatccacgggacgagcccctgcgtgacattcccatataggaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacttgatgcacgatttatagggcaataccctgaagatgctccattctggggcgccaatctggtgctttaaaattgtgcactcaacac < 2:16386‑M1/244‑195 (MQ=255) cAATTTGATAACACGGTAAAAAATTTTGCTGTATTACCGCCCATAAGCCACCGTGACagcatttcctctttgacatccacgggactatcccctgcgtgacattaacatatctgaaaaaatcgtgccagttttgcaactccttggtttttcgagatgcggcaaaaacgtgatgcacgaattatagggcaattccctgaagatgcaccattctggggcaccaatctggtgcgctacaattgggcactcaacac < 2:191667‑M1/251‑195 (MQ=255) tttGAGAACACGGGAAATAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgctcccctgcgtgacattcacatatatgcaaaaatcgtgccagttttgcaactccttgatttttcgcgatgcggcaaaaacgagctgcacgatttatagggcaataccctgaagatgcaccattctggcgaaccaatctgacgcactaaaattgtgcactaaacacagt > 2:349138‑M1/1‑54 (MQ=255) gaACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGCGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtncgctaaaattgtgcactcaacacagtgattt > 2:234004‑M1/1‑49 (MQ=255) aaTTTATCTGTTTTACCGCCCATAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttataggtcaataccctgaagatgcaccattctggggcaccaatctggtgcgctaaaattgtgcactcaacacagtgattatttagcgtaaaac < 1:254775‑M1/251‑216 (MQ=255) tttttaCCGCCCATAAGCCACCGAGACagcntttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgatatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatcttgtgcgctaaaattgtgcactcaacacagtgattatttagcgtaaaacctgatgaa < 2:247087‑M1/249‑224 (MQ=255) gCCCATAAGCCACCGCGACagctcttccttatttctatccacgggaagatcccctgcgtgacattcacatatatgaaaaaatcgtgccaggtttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgcgctaaaattgtgcactcaacacagtgattatttagcgtaaaacctgatgaaaaaacaatc < 2:9100‑M1/251‑233 (MQ=255) aTAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaac > 2:271226‑M1/1‑15 (MQ=255) aTAAGCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaac < 1:271226‑M1/124‑110 (MQ=255) gCCACCGAGACagcatttccttttttctatccacgggacgatcccctgcgtgacattcacatatatgaaaaaatcgtgccagttttgcaactccttgatttttcgagatgcggcaaaaacgtgatgcacgatttatagggcaataccctgaagatgcaccattctggggcaccaatctggtgcgctaaaattgtgcactcaacacagtgattatttagcgtaaaacctgatgaaaaaacaatctttatgta < 2:329218‑M1/251‑241 (MQ=255) | GCTGCGCAGTAATCTTTTATGCCGGGCTATGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAAGCATCGTTTTCCGTATGCTCAACCAGTTTTGCGGGCGCGGTTGCCAGCAAGAGCGCACGCAGTTCTGCATGCTGTTCGAATTTAGCGCGAAGTGCTTTTCGCATCACCTGTTCTTTGACCGACTCCCAGTTTTTACGCAGAGGCTTAG > NC_000913/832225‑832706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |