Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,836,957	Δ8,771 bp		[setC]–[adeD]	[setC], yicL, yicU, nlpA, yicS, nepI, yicN, adeQ, [adeD]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3836957	3845727	8771	24 [0]	[0] 24	[setC]–[adeD]	[setC],yicL,yicU,nlpA,yicS,nepI,yicN,adeQ,[adeD]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3836956	0 (0.000)	24 (0.390)	24/492	0.9	100%	coding (4/1185 nt)	setC	putative arabinose exporter
	?	NC_000913	3845728 =	0 (0.000)					coding (1765/1767 nt)	adeD	adenine deaminase

CAAATCAACTTGTTTTATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACTTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTTTCTGACGGGTATTGCGGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGGTAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGA  >  NC_000913/3836709‑3837176                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                             caaatcaaCTTGTTTTATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGAACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCta                                                                                                                                                                                                                            >  1:306832‑M1/1‑248 (MQ=255)  aaatcaaCTTGTTTTATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaat                                                                                                                                                                                                                          <  1:195915‑M1/251‑5 (MQ=255)    atcaaCTTGTTTTATTTTTACTAACAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataa                                                                                                                                                                                                                        <  1:112170‑M1/251‑7 (MQ=255)           tGTTTTATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagc                                                                                                                                                                                                                 >  2:113375‑M1/1‑238 (MQ=255)             ttttATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTAGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagccc                                                                                                                                                                                                               >  2:453796‑M1/1‑236 (MQ=255)                                aaTAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaa                                                                                                                                                                                             >  1:429051‑M1/1‑217 (MQ=255)                                     cTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcac                                                                                                                                                                                       >  1:149683‑M1/1‑212 (MQ=255)                                             cTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATATAATACTCATTCGACTGGTACTTATTTGAAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggattcatgccgggcaaaagtcaccagttacg                                                                                                                                                                               >  2:483870‑M1/1‑204 (MQ=255)                                              ttACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccgncgtcatgccgggcaaacgtcacccgttacgt                                                                                                                                                                              >  2:217836‑M1/1‑203 (MQ=255)                                                aCTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgttt                                                                                                                                                                            >  1:149378‑M1/1‑201 (MQ=255)                                                     aattaatATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAAATCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgcc                                                                                                                                                                       >  2:460902‑M1/1‑196 (MQ=255)                                                         aatATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactg                                                                                                                                                                   >  1:375575‑M1/1‑192 (MQ=255)                                                                                   tAACATGATTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATCTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgccaactgctgcatttttttctcccgg                                                                                                                                         >  2:67547‑M1/1‑166 (MQ=255)                                                                                                   ataatCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttctt                                                                                                                         <  1:65791‑M1/251‑102 (MQ=255)                                                                                                        ctcAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccact                                                                                                                                                                    >  2:453945‑M1/1‑145 (MQ=255)                                                                                                        ctcAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTGCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaaggcaccagttacgtttatgccact                                                                                                                                                                    <  1:453945‑M1/203‑59 (MQ=255)                                                                                                                 tGGCCCTATAATATTGCGCTAGCATCGTTTTTTGGTTGTATAAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACATATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtcataaaaaaagcccggcgtcatgacgggcaaaagtcaccagttacgtttatgcaactgtcaaatgctgaatttttttcccgcggcggattttgcgttcttccattaccgccact                                                                                                           >  2:304241‑M1/1‑136 (MQ=255)                                                                                                                  ggCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTCTTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttcttccattaccgccactt                                                                                                          >  1:93016‑M1/1‑135 (MQ=255)                                                                                                                         taataTTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGCTACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcttcatgccgggcaaacgtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggatttttcgttcttccattaccgccactatcgccat                                                                                                   >  2:143543‑M1/1‑128 (MQ=255)                                                                                                                                             tttCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttcttccattaccgccactatcgccatcaggcagatacaaccaatcg                                                                               >  2:329475‑M1/1‑108 (MQ=255)                                                                                                                                                                                  acaatacTCATTCGCCTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgccaactgctgaatttttttctcgcggcggcttttgcgttcttccattaccgccactatcgccatcaggcagatacaaccaatcgcggcgatctccagcgcagcgaaggtgcctgcccaccc                                          >  2:92619‑M1/1‑71 (MQ=255)                                                                                                                                                                                                         tATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttcttccattaccgccactatcgccatcaggcagatacaaccaatcgcggcgatatccagcgcggcgaaggtgcctgcccagccggtaaggccgaataccggcgtcc                   >  1:306654‑M1/1‑48 (MQ=255)                                                                                                                                                                                                                aaCTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttcttccattaccgccactatcgccatcaggcagatacaaccaatcgcggcgatatccagcgcggcgaaggtgcctgcccagccggtaaggccgaataccggcgtcccatcggc            >  1:46525‑M1/1‑41 (MQ=255)                                                                                                                                                                                                                            ttttttCGCCCGGTGATTCAGAAGAATGCtaataaaaaaagcccggcgtcatgccgggcaaaagtcaccagttacgtttatgccactgtcaactgctgaatttttttctcgcggcggattttgcgttcttccattaccgccactatcgccatcaggcagatacaaccaatcgcggcgatatccagcgcggcgaaggagcctgcccagccggtaaggccgaataccggcgtcccatcggccatcataccc  >  1:166455‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                             CAAATCAACTTGTTTTATTTTTACTATCAAAAATAGCTCATTGCCTTACTATAATTAATATATAAATTCGGTAATTAATTCTTAACATGCTTTTACTAATAATCTCAATTGCTGGCCCTATAATATTGCGCTAGCATTGCTTTCTGGTTGTATCAGCGATACTCAAAAATTCTTAATACAATACTCATTCGACTGGTACTTATTTGTAACTCAGTTATATTTTTTCGCCCGGTGATTCAGAAGAATGCAAAAAACGGCTACCACTCCATCAAAAATACTTGATCTCACTGCCGCGGCATTTTTACTTGTCGCCTTTCTGACGGGTATTGCGGGCGCTCTTCAGACTCCTACCCTAAGTATATTCCTCGCAGATGAACTGAAAGCCCGTCCTATAATGGTAGGTTTTTTCTTCACCGGTAGCGCTATTATGGGAATTCTGGTCAGTCAATTTCTGGCAAGGCACTCCGA  >  NC_000913/3836709‑3837176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑